Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP48Q86UV5 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP48Q86UV5 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP48Q86UV5 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
USP48Q86UV5 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC26.1■■□□□ 1.77
USP48Q86UV5 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
USP48Q86UV5 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC26.1■■□□□ 1.77
USP48Q86UV5 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
USP48Q86UV5 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP48Q86UV5 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP48Q86UV5 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USP48Q86UV5 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USP48Q86UV5 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP48Q86UV5 PARP1-202ENST00000366792 553 ntTSL 3 BASIC26.09■■□□□ 1.77
USP48Q86UV5 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP48Q86UV5 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USP48Q86UV5 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USP48Q86UV5 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
USP48Q86UV5 UBE2DNL-204ENST00000602536 740 ntBASIC26.09■■□□□ 1.77
USP48Q86UV5 AC087239.1-201ENST00000622671 572 ntBASIC26.09■■□□□ 1.77
USP48Q86UV5 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
USP48Q86UV5 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
USP48Q86UV5 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC26.09■■□□□ 1.77
USP48Q86UV5 ASL-203ENST00000380839 1765 ntTSL 5 BASIC26.09■■□□□ 1.77
USP48Q86UV5 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
USP48Q86UV5 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC26.08■■□□□ 1.77
USP48Q86UV5 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC26.08■■□□□ 1.77
USP48Q86UV5 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
USP48Q86UV5 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC26.08■■□□□ 1.77
USP48Q86UV5 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
USP48Q86UV5 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC26.08■■□□□ 1.77
USP48Q86UV5 AC133041.1-202ENST00000642053 222 ntBASIC26.08■■□□□ 1.77
USP48Q86UV5 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
USP48Q86UV5 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC26.08■■□□□ 1.76
USP48Q86UV5 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
USP48Q86UV5 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP48Q86UV5 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC26.07■■□□□ 1.76
USP48Q86UV5 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
USP48Q86UV5 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC26.07■■□□□ 1.76
USP48Q86UV5 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC26.07■■□□□ 1.76
USP48Q86UV5 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC26.07■■□□□ 1.76
USP48Q86UV5 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP48Q86UV5 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC26.07■■□□□ 1.76
USP48Q86UV5 ECEL1P1-201ENST00000373592 1742 ntBASIC26.07■■□□□ 1.76
USP48Q86UV5 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP48Q86UV5 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC26.07■■□□□ 1.76
USP48Q86UV5 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP48Q86UV5 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC26.06■■□□□ 1.76
USP48Q86UV5 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC26.06■■□□□ 1.76
USP48Q86UV5 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
USP48Q86UV5 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP48Q86UV5 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP48Q86UV5 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP48Q86UV5 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC26.06■■□□□ 1.76
USP48Q86UV5 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC26.06■■□□□ 1.76
USP48Q86UV5 AC098934.4-201ENST00000564127 592 ntBASIC26.06■■□□□ 1.76
USP48Q86UV5 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC26.06■■□□□ 1.76
USP48Q86UV5 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC26.06■■□□□ 1.76
USP48Q86UV5 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
USP48Q86UV5 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC26.06■■□□□ 1.76
USP48Q86UV5 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
USP48Q86UV5 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
USP48Q86UV5 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC26.05■■□□□ 1.76
USP48Q86UV5 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
USP48Q86UV5 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
USP48Q86UV5 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
USP48Q86UV5 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
USP48Q86UV5 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC26.05■■□□□ 1.76
USP48Q86UV5 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC26.04■■□□□ 1.76
USP48Q86UV5 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC26.04■■□□□ 1.76
USP48Q86UV5 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
USP48Q86UV5 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
USP48Q86UV5 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
USP48Q86UV5 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
USP48Q86UV5 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
USP48Q86UV5 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
USP48Q86UV5 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
USP48Q86UV5 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC26.04■■□□□ 1.76
USP48Q86UV5 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP48Q86UV5 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP48Q86UV5 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP48Q86UV5 AF201337.1-201ENST00000520239 748 ntBASIC26.03■■□□□ 1.76
USP48Q86UV5 ARL16-209ENST00000573715 763 ntTSL 3 BASIC26.03■■□□□ 1.76
USP48Q86UV5 ARL16-211ENST00000576135 694 ntTSL 3 BASIC26.03■■□□□ 1.76
USP48Q86UV5 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP48Q86UV5 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP48Q86UV5 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP48Q86UV5 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC26.03■■□□□ 1.76
USP48Q86UV5 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC26.03■■□□□ 1.76
USP48Q86UV5 GCA-201ENST00000233612 1694 ntTSL 2 BASIC26.03■■□□□ 1.76
USP48Q86UV5 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
USP48Q86UV5 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
USP48Q86UV5 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC26.02■■□□□ 1.76
USP48Q86UV5 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP48Q86UV5 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
USP48Q86UV5 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC26.02■■□□□ 1.76
USP48Q86UV5 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
USP48Q86UV5 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC26.02■■□□□ 1.76
USP48Q86UV5 AC105036.2-201ENST00000569468 176 ntBASIC26.02■■□□□ 1.76
USP48Q86UV5 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC26.02■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms