Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
UBE3DQ7Z6J8 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 AC007375.3-201ENST00000600936 2314 ntBASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.21■□□□□ 0.83
UBE3DQ7Z6J8 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.83
UBE3DQ7Z6J8 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
UBE3DQ7Z6J8 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
UBE3DQ7Z6J8 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 AC123595.1-201ENST00000440769 1046 ntBASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 YBX1P1-201ENST00000445822 960 ntBASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 CLDN5-201ENST00000403084 2357 ntBASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
UBE3DQ7Z6J8 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 AC026310.3-201ENST00000625186 2373 ntBASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 LINC02228-203ENST00000641970 1355 ntBASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 Z98882.1-201ENST00000622160 2253 ntBASIC20.18■□□□□ 0.82
UBE3DQ7Z6J8 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBE3DQ7Z6J8 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBE3DQ7Z6J8 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
UBE3DQ7Z6J8 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms