Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIM2P55344 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.2■□□□□ 0.82
LIM2P55344 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIM2P55344 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.2■□□□□ 0.82
LIM2P55344 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIM2P55344 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
LIM2P55344 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
LIM2P55344 LINC02228-203ENST00000641970 1355 ntBASIC20.2■□□□□ 0.82
LIM2P55344 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
LIM2P55344 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIM2P55344 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.19■□□□□ 0.82
LIM2P55344 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIM2P55344 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIM2P55344 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.19■□□□□ 0.82
LIM2P55344 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
LIM2P55344 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LIM2P55344 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.19■□□□□ 0.82
LIM2P55344 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.19■□□□□ 0.82
LIM2P55344 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
LIM2P55344 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIM2P55344 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIM2P55344 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
LIM2P55344 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LIM2P55344 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIM2P55344 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LIM2P55344 AC010542.4-201ENST00000563151 1910 ntBASIC20.18■□□□□ 0.82
LIM2P55344 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIM2P55344 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIM2P55344 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIM2P55344 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.18■□□□□ 0.82
LIM2P55344 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.18■□□□□ 0.82
LIM2P55344 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.18■□□□□ 0.82
LIM2P55344 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIM2P55344 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LIM2P55344 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.18■□□□□ 0.82
LIM2P55344 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIM2P55344 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
LIM2P55344 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.17■□□□□ 0.82
LIM2P55344 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.17■□□□□ 0.82
LIM2P55344 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LIM2P55344 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.17■□□□□ 0.82
LIM2P55344 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.17■□□□□ 0.82
LIM2P55344 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
LIM2P55344 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIM2P55344 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.17■□□□□ 0.82
LIM2P55344 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LIM2P55344 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIM2P55344 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIM2P55344 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
LIM2P55344 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LIM2P55344 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.17■□□□□ 0.82
LIM2P55344 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.17■□□□□ 0.82
LIM2P55344 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC20.17■□□□□ 0.82
LIM2P55344 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.16■□□□□ 0.82
LIM2P55344 AC003102.1-202ENST00000563394 1796 ntBASIC20.16■□□□□ 0.82
LIM2P55344 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.16■□□□□ 0.82
LIM2P55344 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
LIM2P55344 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
LIM2P55344 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.16■□□□□ 0.82
LIM2P55344 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIM2P55344 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.16■□□□□ 0.82
LIM2P55344 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.16■□□□□ 0.82
LIM2P55344 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
LIM2P55344 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC20.16■□□□□ 0.82
LIM2P55344 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIM2P55344 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIM2P55344 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
LIM2P55344 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIM2P55344 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
LIM2P55344 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
LIM2P55344 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIM2P55344 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LIM2P55344 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LIM2P55344 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LIM2P55344 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIM2P55344 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
LIM2P55344 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
LIM2P55344 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LIM2P55344 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.15■□□□□ 0.82
LIM2P55344 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LIM2P55344 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.15■□□□□ 0.82
LIM2P55344 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.15■□□□□ 0.82
LIM2P55344 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
LIM2P55344 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIM2P55344 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIM2P55344 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.15■□□□□ 0.82
LIM2P55344 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC20.15■□□□□ 0.82
LIM2P55344 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.15■□□□□ 0.82
LIM2P55344 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIM2P55344 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.15■□□□□ 0.82
LIM2P55344 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.15■□□□□ 0.82
LIM2P55344 AC026310.3-201ENST00000625186 2373 ntBASIC20.15■□□□□ 0.82
LIM2P55344 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
LIM2P55344 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
LIM2P55344 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
LIM2P55344 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
LIM2P55344 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
LIM2P55344 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
LIM2P55344 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.14■□□□□ 0.81
LIM2P55344 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms