Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXA1P55317 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.6■□□□□ 0.89
FOXA1P55317 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.6■□□□□ 0.89
FOXA1P55317 AL034346.1-201ENST00000568244 1277 ntBASIC20.6■□□□□ 0.89
FOXA1P55317 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.6■□□□□ 0.89
FOXA1P55317 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
FOXA1P55317 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXA1P55317 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
FOXA1P55317 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
FOXA1P55317 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXA1P55317 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.6■□□□□ 0.89
FOXA1P55317 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.6■□□□□ 0.89
FOXA1P55317 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
FOXA1P55317 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
FOXA1P55317 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
FOXA1P55317 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
FOXA1P55317 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
FOXA1P55317 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
FOXA1P55317 AL136116.3-201ENST00000402907 1138 ntBASIC20.59■□□□□ 0.89
FOXA1P55317 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.59■□□□□ 0.89
FOXA1P55317 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
FOXA1P55317 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.59■□□□□ 0.89
FOXA1P55317 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
FOXA1P55317 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
FOXA1P55317 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
FOXA1P55317 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.59■□□□□ 0.89
FOXA1P55317 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
FOXA1P55317 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
FOXA1P55317 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
FOXA1P55317 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
FOXA1P55317 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.58■□□□□ 0.89
FOXA1P55317 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.58■□□□□ 0.89
FOXA1P55317 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.58■□□□□ 0.89
FOXA1P55317 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
FOXA1P55317 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
FOXA1P55317 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
FOXA1P55317 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.58■□□□□ 0.89
FOXA1P55317 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
FOXA1P55317 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.58■□□□□ 0.89
FOXA1P55317 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
FOXA1P55317 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.58■□□□□ 0.88
FOXA1P55317 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
FOXA1P55317 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.57■□□□□ 0.88
FOXA1P55317 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
FOXA1P55317 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
FOXA1P55317 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FOXA1P55317 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FOXA1P55317 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
FOXA1P55317 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
FOXA1P55317 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
FOXA1P55317 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
FOXA1P55317 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.57■□□□□ 0.88
FOXA1P55317 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
FOXA1P55317 AP006587.3-201ENST00000525742 1516 ntBASIC20.57■□□□□ 0.88
FOXA1P55317 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
FOXA1P55317 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
FOXA1P55317 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC20.57■□□□□ 0.88
FOXA1P55317 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
FOXA1P55317 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
FOXA1P55317 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
FOXA1P55317 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
FOXA1P55317 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.56■□□□□ 0.88
FOXA1P55317 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.56■□□□□ 0.88
FOXA1P55317 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
FOXA1P55317 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.56■□□□□ 0.88
FOXA1P55317 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
FOXA1P55317 MIR4767-201ENST00000582827 78 ntBASIC20.56■□□□□ 0.88
FOXA1P55317 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.56■□□□□ 0.88
FOXA1P55317 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
FOXA1P55317 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.56■□□□□ 0.88
FOXA1P55317 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.56■□□□□ 0.88
FOXA1P55317 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
FOXA1P55317 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
FOXA1P55317 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
FOXA1P55317 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
FOXA1P55317 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
FOXA1P55317 AC073130.3-201ENST00000624389 2278 ntBASIC20.56■□□□□ 0.88
FOXA1P55317 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
FOXA1P55317 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
FOXA1P55317 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
FOXA1P55317 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
FOXA1P55317 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.55■□□□□ 0.88
FOXA1P55317 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
FOXA1P55317 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
FOXA1P55317 SMUG1P1-201ENST00000590640 811 ntBASIC20.55■□□□□ 0.88
FOXA1P55317 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
FOXA1P55317 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
FOXA1P55317 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
FOXA1P55317 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
FOXA1P55317 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
FOXA1P55317 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
FOXA1P55317 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
FOXA1P55317 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.54■□□□□ 0.88
FOXA1P55317 UNC93B3-201ENST00000308076 687 ntBASIC20.54■□□□□ 0.88
FOXA1P55317 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.54■□□□□ 0.88
FOXA1P55317 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
FOXA1P55317 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.54■□□□□ 0.88
FOXA1P55317 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
FOXA1P55317 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms