Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 NCF1B-203ENST00000435988 1254 ntBASIC18.03■□□□□ 0.48
PDLIM4P50479 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PDLIM4P50479 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.03■□□□□ 0.48
PDLIM4P50479 SERP1-208ENST00000491660 830 ntTSL 2 BASIC18.03■□□□□ 0.48
PDLIM4P50479 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
PDLIM4P50479 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.03■□□□□ 0.48
PDLIM4P50479 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.03■□□□□ 0.48
PDLIM4P50479 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.03■□□□□ 0.48
PDLIM4P50479 UBE2DNL-204ENST00000602536 740 ntBASIC18.03■□□□□ 0.48
PDLIM4P50479 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC18.03■□□□□ 0.48
PDLIM4P50479 C1orf229-201ENST00000623686 2258 ntBASIC18.03■□□□□ 0.48
PDLIM4P50479 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
PDLIM4P50479 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
PDLIM4P50479 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.03■□□□□ 0.48
PDLIM4P50479 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
PDLIM4P50479 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC18.03■□□□□ 0.48
PDLIM4P50479 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM4P50479 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM4P50479 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM4P50479 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM4P50479 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC18.02■□□□□ 0.48
PDLIM4P50479 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM4P50479 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM4P50479 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
PDLIM4P50479 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM4P50479 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
PDLIM4P50479 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
PDLIM4P50479 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.02■□□□□ 0.48
PDLIM4P50479 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.02■□□□□ 0.48
PDLIM4P50479 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.02■□□□□ 0.48
PDLIM4P50479 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.02■□□□□ 0.48
PDLIM4P50479 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.02■□□□□ 0.48
PDLIM4P50479 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
PDLIM4P50479 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC18.02■□□□□ 0.47
PDLIM4P50479 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PDLIM4P50479 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PDLIM4P50479 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PDLIM4P50479 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PDLIM4P50479 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
PDLIM4P50479 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
PDLIM4P50479 STK25-234ENST00000535007 2459 ntTSL 2 BASIC18.01■□□□□ 0.47
PDLIM4P50479 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM4P50479 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
PDLIM4P50479 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM4P50479 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM4P50479 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM4P50479 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
PDLIM4P50479 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
PDLIM4P50479 AC007322.1-201ENST00000426983 750 ntBASIC18.01■□□□□ 0.47
PDLIM4P50479 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.01■□□□□ 0.47
PDLIM4P50479 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC18.01■□□□□ 0.47
PDLIM4P50479 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.01■□□□□ 0.47
PDLIM4P50479 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.01■□□□□ 0.47
PDLIM4P50479 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.01■□□□□ 0.47
PDLIM4P50479 MYCNOS-205ENST00000641950 531 ntBASIC18.01■□□□□ 0.47
PDLIM4P50479 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM4P50479 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM4P50479 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM4P50479 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM4P50479 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM4P50479 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.01■□□□□ 0.47
PDLIM4P50479 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
PDLIM4P50479 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
PDLIM4P50479 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
PDLIM4P50479 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM4P50479 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM4P50479 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM4P50479 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM4P50479 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
PDLIM4P50479 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
PDLIM4P50479 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18■□□□□ 0.47
PDLIM4P50479 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18■□□□□ 0.47
PDLIM4P50479 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18■□□□□ 0.47
PDLIM4P50479 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
PDLIM4P50479 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18■□□□□ 0.47
PDLIM4P50479 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC17.99■□□□□ 0.47
PDLIM4P50479 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC17.99■□□□□ 0.47
PDLIM4P50479 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM4P50479 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.99■□□□□ 0.47
PDLIM4P50479 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
PDLIM4P50479 AL121832.2-201ENST00000610979 668 ntBASIC17.99■□□□□ 0.47
PDLIM4P50479 MAZ-216ENST00000616501 991 ntTSL 5 BASIC17.99■□□□□ 0.47
PDLIM4P50479 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM4P50479 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM4P50479 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC17.99■□□□□ 0.47
PDLIM4P50479 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
PDLIM4P50479 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.99■□□□□ 0.47
PDLIM4P50479 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM4P50479 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
PDLIM4P50479 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
PDLIM4P50479 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM4P50479 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM4P50479 AL121603.2-201ENST00000557373 2117 ntBASIC17.98■□□□□ 0.47
PDLIM4P50479 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC17.98■□□□□ 0.47
PDLIM4P50479 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC17.98■□□□□ 0.47
PDLIM4P50479 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM4P50479 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM4P50479 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
PDLIM4P50479 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
PDLIM4P50479 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms