Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC17.53■□□□□ 0.4
HOXA1P49639 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXA1P49639 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC17.53■□□□□ 0.4
HOXA1P49639 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXA1P49639 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.53■□□□□ 0.4
HOXA1P49639 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXA1P49639 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXA1P49639 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
HOXA1P49639 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC17.52■□□□□ 0.4
HOXA1P49639 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.52■□□□□ 0.4
HOXA1P49639 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC17.52■□□□□ 0.4
HOXA1P49639 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
HOXA1P49639 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC17.52■□□□□ 0.4
HOXA1P49639 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HOXA1P49639 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
HOXA1P49639 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
HOXA1P49639 AC087289.5-201ENST00000586076 3175 ntBASIC17.52■□□□□ 0.4
HOXA1P49639 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC17.52■□□□□ 0.4
HOXA1P49639 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC17.52■□□□□ 0.4
HOXA1P49639 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC17.52■□□□□ 0.4
HOXA1P49639 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC17.52■□□□□ 0.4
HOXA1P49639 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
HOXA1P49639 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.52■□□□□ 0.39
HOXA1P49639 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HOXA1P49639 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HOXA1P49639 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HOXA1P49639 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.39
HOXA1P49639 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
HOXA1P49639 AC021242.3-201ENST00000607598 1377 ntBASIC17.52■□□□□ 0.39
HOXA1P49639 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
HOXA1P49639 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HOXA1P49639 AL157384.1-201ENST00000445995 2473 ntBASIC17.52■□□□□ 0.39
HOXA1P49639 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
HOXA1P49639 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA1P49639 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA1P49639 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA1P49639 AC004687.1-201ENST00000579003 1625 ntBASIC17.51■□□□□ 0.39
HOXA1P49639 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC17.51■□□□□ 0.39
HOXA1P49639 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA1P49639 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.51■□□□□ 0.39
HOXA1P49639 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.51■□□□□ 0.39
HOXA1P49639 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA1P49639 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
HOXA1P49639 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA1P49639 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC17.51■□□□□ 0.39
HOXA1P49639 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA1P49639 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA1P49639 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.51■□□□□ 0.39
HOXA1P49639 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA1P49639 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC17.51■□□□□ 0.39
HOXA1P49639 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA1P49639 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
HOXA1P49639 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA1P49639 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA1P49639 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
HOXA1P49639 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA1P49639 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA1P49639 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.5■□□□□ 0.39
HOXA1P49639 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
HOXA1P49639 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA1P49639 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA1P49639 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.5■□□□□ 0.39
HOXA1P49639 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA1P49639 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC17.5■□□□□ 0.39
HOXA1P49639 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC17.5■□□□□ 0.39
HOXA1P49639 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC17.5■□□□□ 0.39
HOXA1P49639 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
HOXA1P49639 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
HOXA1P49639 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
HOXA1P49639 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC17.5■□□□□ 0.39
HOXA1P49639 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA1P49639 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA1P49639 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC17.49■□□□□ 0.39
HOXA1P49639 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
HOXA1P49639 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA1P49639 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA1P49639 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXA1P49639 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXA1P49639 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXA1P49639 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA1P49639 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC17.49■□□□□ 0.39
HOXA1P49639 MTDHP2-201ENST00000601468 714 ntBASIC17.49■□□□□ 0.39
HOXA1P49639 NKILA-201ENST00000613231 537 ntTSL 4 BASIC17.49■□□□□ 0.39
HOXA1P49639 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA1P49639 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA1P49639 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC17.49■□□□□ 0.39
HOXA1P49639 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA1P49639 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA1P49639 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA1P49639 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.49■□□□□ 0.39
HOXA1P49639 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA1P49639 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA1P49639 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
HOXA1P49639 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA1P49639 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HOXA1P49639 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HOXA1P49639 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC17.48■□□□□ 0.39
HOXA1P49639 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
HOXA1P49639 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.48■□□□□ 0.39
HOXA1P49639 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms