Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 KRT17P1-201ENST00000399211 1546 ntBASIC26.36■■□□□ 1.81
BRCA1P38398 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC26.36■■□□□ 1.81
BRCA1P38398 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC26.36■■□□□ 1.81
BRCA1P38398 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC26.36■■□□□ 1.81
BRCA1P38398 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC26.36■■□□□ 1.81
BRCA1P38398 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
BRCA1P38398 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
BRCA1P38398 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
BRCA1P38398 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC26.35■■□□□ 1.81
BRCA1P38398 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC26.35■■□□□ 1.81
BRCA1P38398 KRT16P2-201ENST00000414673 1423 ntBASIC26.35■■□□□ 1.81
BRCA1P38398 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
BRCA1P38398 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
BRCA1P38398 AC012618.2-201ENST00000428058 849 ntBASIC26.35■■□□□ 1.81
BRCA1P38398 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC26.35■■□□□ 1.81
BRCA1P38398 SNORA78-201ENST00000459373 127 ntBASIC26.35■■□□□ 1.81
BRCA1P38398 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
BRCA1P38398 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
BRCA1P38398 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
BRCA1P38398 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
BRCA1P38398 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC26.35■■□□□ 1.81
BRCA1P38398 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
BRCA1P38398 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
BRCA1P38398 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
BRCA1P38398 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
BRCA1P38398 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC26.34■■□□□ 1.81
BRCA1P38398 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
BRCA1P38398 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
BRCA1P38398 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC26.34■■□□□ 1.81
BRCA1P38398 CD44-222ENST00000526025 1052 ntTSL 2 BASIC26.34■■□□□ 1.81
BRCA1P38398 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC26.34■■□□□ 1.81
BRCA1P38398 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC26.34■■□□□ 1.81
BRCA1P38398 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
BRCA1P38398 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
BRCA1P38398 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
BRCA1P38398 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
BRCA1P38398 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC26.33■■□□□ 1.81
BRCA1P38398 AC233263.1-201ENST00000578059 224 ntBASIC26.33■■□□□ 1.81
BRCA1P38398 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC26.32■■□□□ 1.8
BRCA1P38398 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC26.32■■□□□ 1.8
BRCA1P38398 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
BRCA1P38398 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
BRCA1P38398 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
BRCA1P38398 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
BRCA1P38398 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
BRCA1P38398 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC26.32■■□□□ 1.8
BRCA1P38398 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
BRCA1P38398 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC26.32■■□□□ 1.8
BRCA1P38398 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC26.32■■□□□ 1.8
BRCA1P38398 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC26.32■■□□□ 1.8
BRCA1P38398 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC26.32■■□□□ 1.8
BRCA1P38398 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
BRCA1P38398 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC26.31■■□□□ 1.8
BRCA1P38398 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
BRCA1P38398 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
BRCA1P38398 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
BRCA1P38398 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
BRCA1P38398 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
BRCA1P38398 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
BRCA1P38398 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
BRCA1P38398 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
BRCA1P38398 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
BRCA1P38398 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC26.3■■□□□ 1.8
BRCA1P38398 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
BRCA1P38398 PNMA6B-201ENST00000538162 1200 ntBASIC26.3■■□□□ 1.8
BRCA1P38398 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC26.3■■□□□ 1.8
BRCA1P38398 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC26.3■■□□□ 1.8
BRCA1P38398 AC243732.1-201ENST00000612648 864 ntBASIC26.3■■□□□ 1.8
BRCA1P38398 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
BRCA1P38398 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
BRCA1P38398 AL139125.2-201ENST00000623134 1869 ntBASIC26.3■■□□□ 1.8
BRCA1P38398 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
BRCA1P38398 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
BRCA1P38398 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
BRCA1P38398 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC26.3■■□□□ 1.8
BRCA1P38398 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
BRCA1P38398 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
BRCA1P38398 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC26.3■■□□□ 1.8
BRCA1P38398 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
BRCA1P38398 KLF2-202ENST00000592003 564 ntTSL 3 BASIC26.3■■□□□ 1.8
BRCA1P38398 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
BRCA1P38398 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC26.29■■□□□ 1.8
BRCA1P38398 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
BRCA1P38398 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
BRCA1P38398 BX088651.1-201ENST00000540551 451 ntBASIC26.29■■□□□ 1.8
BRCA1P38398 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
BRCA1P38398 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
BRCA1P38398 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
BRCA1P38398 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
BRCA1P38398 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC26.28■■□□□ 1.8
BRCA1P38398 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
BRCA1P38398 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC26.28■■□□□ 1.8
BRCA1P38398 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC26.28■■□□□ 1.8
BRCA1P38398 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC26.28■■□□□ 1.8
BRCA1P38398 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.28■■□□□ 1.8
BRCA1P38398 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC26.28■■□□□ 1.8
BRCA1P38398 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
BRCA1P38398 AC211429.1-201ENST00000415277 523 ntBASIC26.28■■□□□ 1.8
BRCA1P38398 AL355472.2-201ENST00000422958 438 ntBASIC26.28■■□□□ 1.8
BRCA1P38398 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC26.28■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms