Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DMBP28068 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DMBP28068 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC16.17■□□□□ 0.18
HLA-DMBP28068 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DMBP28068 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC16.17■□□□□ 0.18
HLA-DMBP28068 AL136162.1-201ENST00000607711 1078 ntBASIC16.17■□□□□ 0.18
HLA-DMBP28068 AC092171.4-201ENST00000609130 632 ntBASIC16.17■□□□□ 0.18
HLA-DMBP28068 AC005837.3-201ENST00000612163 286 ntBASIC16.17■□□□□ 0.18
HLA-DMBP28068 AC087239.1-201ENST00000622671 572 ntBASIC16.17■□□□□ 0.18
HLA-DMBP28068 AC068587.7-201ENST00000641602 218 ntBASIC16.17■□□□□ 0.18
HLA-DMBP28068 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC16.17■□□□□ 0.18
HLA-DMBP28068 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC16.17■□□□□ 0.18
HLA-DMBP28068 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DMBP28068 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DMBP28068 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DMBP28068 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC16.17■□□□□ 0.18
HLA-DMBP28068 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
HLA-DMBP28068 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DMBP28068 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DMBP28068 SYT6-210ENST00000641643 1587 ntBASIC16.17■□□□□ 0.18
HLA-DMBP28068 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HLA-DMBP28068 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DMBP28068 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC16.16■□□□□ 0.18
HLA-DMBP28068 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DMBP28068 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
HLA-DMBP28068 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DMBP28068 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
HLA-DMBP28068 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HLA-DMBP28068 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DMBP28068 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DMBP28068 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC16.16■□□□□ 0.18
HLA-DMBP28068 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC16.16■□□□□ 0.18
HLA-DMBP28068 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DMBP28068 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DMBP28068 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
HLA-DMBP28068 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.16■□□□□ 0.18
HLA-DMBP28068 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DMBP28068 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DMBP28068 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC16.16■□□□□ 0.18
HLA-DMBP28068 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DMBP28068 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DMBP28068 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HLA-DMBP28068 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC16.16■□□□□ 0.18
HLA-DMBP28068 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC16.15■□□□□ 0.18
HLA-DMBP28068 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DMBP28068 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DMBP28068 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DMBP28068 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DMBP28068 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DMBP28068 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DMBP28068 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HLA-DMBP28068 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
HLA-DMBP28068 SLC47A1P1-202ENST00000449666 945 ntBASIC16.15■□□□□ 0.18
HLA-DMBP28068 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC16.15■□□□□ 0.18
HLA-DMBP28068 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC16.15■□□□□ 0.18
HLA-DMBP28068 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DMBP28068 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DMBP28068 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
HLA-DMBP28068 AC106739.1-201ENST00000617035 715 ntBASIC16.15■□□□□ 0.18
HLA-DMBP28068 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC16.15■□□□□ 0.18
HLA-DMBP28068 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC16.14■□□□□ 0.18
HLA-DMBP28068 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC16.14■□□□□ 0.18
HLA-DMBP28068 OXCT2P1-201ENST00000447263 1535 ntBASIC16.14■□□□□ 0.18
HLA-DMBP28068 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DMBP28068 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
HLA-DMBP28068 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC16.14■□□□□ 0.17
HLA-DMBP28068 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
HLA-DMBP28068 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DMBP28068 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DMBP28068 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC16.14■□□□□ 0.17
HLA-DMBP28068 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC16.14■□□□□ 0.17
HLA-DMBP28068 DUX4L19-201ENST00000557448 1267 ntBASIC16.14■□□□□ 0.17
HLA-DMBP28068 AC133561.4-201ENST00000566112 224 ntBASIC16.14■□□□□ 0.17
HLA-DMBP28068 AC104564.3-201ENST00000582367 638 ntBASIC16.14■□□□□ 0.17
HLA-DMBP28068 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC16.14■□□□□ 0.17
HLA-DMBP28068 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DMBP28068 AC135279.3-201ENST00000610945 1311 ntBASIC16.14■□□□□ 0.17
HLA-DMBP28068 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC16.14■□□□□ 0.17
HLA-DMBP28068 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DMBP28068 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
HLA-DMBP28068 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DMBP28068 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DMBP28068 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DMBP28068 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC16.13■□□□□ 0.17
HLA-DMBP28068 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DMBP28068 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DMBP28068 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HLA-DMBP28068 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC16.13■□□□□ 0.17
HLA-DMBP28068 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC16.13■□□□□ 0.17
HLA-DMBP28068 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC16.13■□□□□ 0.17
HLA-DMBP28068 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC16.13■□□□□ 0.17
HLA-DMBP28068 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC16.13■□□□□ 0.17
HLA-DMBP28068 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DMBP28068 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC16.13■□□□□ 0.17
HLA-DMBP28068 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DMBP28068 MFF-203ENST00000349901 1716 ntTSL 2 BASIC16.13■□□□□ 0.17
HLA-DMBP28068 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DMBP28068 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DMBP28068 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DMBP28068 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms