Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPTA1P02549 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPTA1P02549 KRT18P21-201ENST00000515767 1272 ntBASIC19.4■□□□□ 0.7
SPTA1P02549 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.4■□□□□ 0.7
SPTA1P02549 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.4■□□□□ 0.7
SPTA1P02549 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC19.39■□□□□ 0.7
SPTA1P02549 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC19.39■□□□□ 0.69
SPTA1P02549 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.39■□□□□ 0.69
SPTA1P02549 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPTA1P02549 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPTA1P02549 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPTA1P02549 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPTA1P02549 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPTA1P02549 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPTA1P02549 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPTA1P02549 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPTA1P02549 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.39■□□□□ 0.69
SPTA1P02549 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SPTA1P02549 AC138932.3-201ENST00000567634 1902 ntBASIC19.39■□□□□ 0.69
SPTA1P02549 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPTA1P02549 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SPTA1P02549 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.39■□□□□ 0.69
SPTA1P02549 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.39■□□□□ 0.69
SPTA1P02549 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.38■□□□□ 0.69
SPTA1P02549 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.38■□□□□ 0.69
SPTA1P02549 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.38■□□□□ 0.69
SPTA1P02549 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SPTA1P02549 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
SPTA1P02549 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.38■□□□□ 0.69
SPTA1P02549 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.38■□□□□ 0.69
SPTA1P02549 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.38■□□□□ 0.69
SPTA1P02549 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.38■□□□□ 0.69
SPTA1P02549 REXO1L12P-201ENST00000622156 912 ntBASIC19.38■□□□□ 0.69
SPTA1P02549 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SPTA1P02549 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC19.38■□□□□ 0.69
SPTA1P02549 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SPTA1P02549 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
SPTA1P02549 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SPTA1P02549 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.37■□□□□ 0.69
SPTA1P02549 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.37■□□□□ 0.69
SPTA1P02549 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SPTA1P02549 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.37■□□□□ 0.69
SPTA1P02549 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC19.37■□□□□ 0.69
SPTA1P02549 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC19.37■□□□□ 0.69
SPTA1P02549 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SPTA1P02549 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SPTA1P02549 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SPTA1P02549 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SPTA1P02549 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SPTA1P02549 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SPTA1P02549 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.37■□□□□ 0.69
SPTA1P02549 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.37■□□□□ 0.69
SPTA1P02549 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SPTA1P02549 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
SPTA1P02549 KRT16P2-201ENST00000414673 1423 ntBASIC19.37■□□□□ 0.69
SPTA1P02549 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SPTA1P02549 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.37■□□□□ 0.69
SPTA1P02549 LINC01960-201ENST00000563759 1884 ntBASIC19.37■□□□□ 0.69
SPTA1P02549 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
SPTA1P02549 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SPTA1P02549 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.36■□□□□ 0.69
SPTA1P02549 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.36■□□□□ 0.69
SPTA1P02549 Z99916.2-201ENST00000604037 246 ntBASIC19.36■□□□□ 0.69
SPTA1P02549 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.36■□□□□ 0.69
SPTA1P02549 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.36■□□□□ 0.69
SPTA1P02549 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SPTA1P02549 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SPTA1P02549 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SPTA1P02549 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SPTA1P02549 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SPTA1P02549 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SPTA1P02549 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.36■□□□□ 0.69
SPTA1P02549 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SPTA1P02549 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SPTA1P02549 AC004812.2-201ENST00000611079 2094 ntBASIC19.36■□□□□ 0.69
SPTA1P02549 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SPTA1P02549 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.36■□□□□ 0.69
SPTA1P02549 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SPTA1P02549 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SPTA1P02549 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.35■□□□□ 0.69
SPTA1P02549 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.35■□□□□ 0.69
SPTA1P02549 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
SPTA1P02549 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SPTA1P02549 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SPTA1P02549 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SPTA1P02549 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SPTA1P02549 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.35■□□□□ 0.69
SPTA1P02549 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.35■□□□□ 0.69
SPTA1P02549 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.35■□□□□ 0.69
SPTA1P02549 ABCB10P4-201ENST00000566803 2184 ntBASIC19.35■□□□□ 0.69
SPTA1P02549 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SPTA1P02549 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SPTA1P02549 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.34■□□□□ 0.69
SPTA1P02549 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
SPTA1P02549 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SPTA1P02549 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SPTA1P02549 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.34■□□□□ 0.69
SPTA1P02549 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.34■□□□□ 0.69
SPTA1P02549 SNORA78-201ENST00000459373 127 ntBASIC19.34■□□□□ 0.69
SPTA1P02549 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms