Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 TERF1P2-201ENST00000583350 1212 ntBASIC20.04■□□□□ 0.8
LDB3O75112 AC087623.3-201ENST00000607047 1098 ntBASIC20.04■□□□□ 0.8
LDB3O75112 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
LDB3O75112 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LDB3O75112 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDB3O75112 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LDB3O75112 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
LDB3O75112 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.03■□□□□ 0.8
LDB3O75112 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LDB3O75112 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
LDB3O75112 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LDB3O75112 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.03■□□□□ 0.8
LDB3O75112 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.03■□□□□ 0.8
LDB3O75112 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.03■□□□□ 0.8
LDB3O75112 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.03■□□□□ 0.8
LDB3O75112 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.03■□□□□ 0.8
LDB3O75112 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.03■□□□□ 0.8
LDB3O75112 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDB3O75112 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.03■□□□□ 0.8
LDB3O75112 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDB3O75112 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.03■□□□□ 0.8
LDB3O75112 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB3O75112 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
LDB3O75112 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.02■□□□□ 0.8
LDB3O75112 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.02■□□□□ 0.8
LDB3O75112 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.02■□□□□ 0.8
LDB3O75112 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.02■□□□□ 0.8
LDB3O75112 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.02■□□□□ 0.8
LDB3O75112 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.02■□□□□ 0.8
LDB3O75112 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB3O75112 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB3O75112 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
LDB3O75112 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.02■□□□□ 0.8
LDB3O75112 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB3O75112 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB3O75112 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB3O75112 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB3O75112 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB3O75112 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDB3O75112 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
LDB3O75112 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
LDB3O75112 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
LDB3O75112 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
LDB3O75112 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDB3O75112 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.01■□□□□ 0.79
LDB3O75112 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LDB3O75112 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDB3O75112 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.01■□□□□ 0.79
LDB3O75112 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.01■□□□□ 0.79
LDB3O75112 AC079140.4-201ENST00000507448 529 ntBASIC20.01■□□□□ 0.79
LDB3O75112 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.01■□□□□ 0.79
LDB3O75112 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
LDB3O75112 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.01■□□□□ 0.79
LDB3O75112 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.01■□□□□ 0.79
LDB3O75112 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.01■□□□□ 0.79
LDB3O75112 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LDB3O75112 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LDB3O75112 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20■□□□□ 0.79
LDB3O75112 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LDB3O75112 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20■□□□□ 0.79
LDB3O75112 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LDB3O75112 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20■□□□□ 0.79
LDB3O75112 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
LDB3O75112 FXN-202ENST00000396364 980 ntTSL 5 BASIC20■□□□□ 0.79
LDB3O75112 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LDB3O75112 DUX4L2-201ENST00000561772 1275 ntBASIC20■□□□□ 0.79
LDB3O75112 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20■□□□□ 0.79
LDB3O75112 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC20■□□□□ 0.79
LDB3O75112 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20■□□□□ 0.79
LDB3O75112 DUX4L6-201ENST00000626483 1275 ntBASIC20■□□□□ 0.79
LDB3O75112 DUX4L1-201ENST00000627662 1275 ntBASIC20■□□□□ 0.79
LDB3O75112 DUX4L8-201ENST00000629013 1275 ntBASIC20■□□□□ 0.79
LDB3O75112 DUX4L3-201ENST00000630187 1275 ntBASIC20■□□□□ 0.79
LDB3O75112 DUX4L7-201ENST00000630678 1275 ntBASIC20■□□□□ 0.79
LDB3O75112 DUX4L5-201ENST00000630834 1275 ntBASIC20■□□□□ 0.79
LDB3O75112 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20■□□□□ 0.79
LDB3O75112 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20■□□□□ 0.79
LDB3O75112 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20■□□□□ 0.79
LDB3O75112 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
LDB3O75112 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDB3O75112 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LDB3O75112 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.99■□□□□ 0.79
LDB3O75112 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.99■□□□□ 0.79
LDB3O75112 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LDB3O75112 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.99■□□□□ 0.79
LDB3O75112 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LDB3O75112 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
LDB3O75112 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDB3O75112 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LDB3O75112 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.99■□□□□ 0.79
LDB3O75112 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
LDB3O75112 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LDB3O75112 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC19.99■□□□□ 0.79
LDB3O75112 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.99■□□□□ 0.79
LDB3O75112 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDB3O75112 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDB3O75112 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDB3O75112 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDB3O75112 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDB3O75112 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms