Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 AC069544.1-201ENST00000609399 999 ntBASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 AC133561.5-201ENST00000635547 218 ntBASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A6A6NMZ7 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.36■□□□□ 0.69
COL6A6A6NMZ7 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC19.36■□□□□ 0.69
COL6A6A6NMZ7 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.36■□□□□ 0.69
COL6A6A6NMZ7 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A6A6NMZ7 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A6A6NMZ7 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.36■□□□□ 0.69
COL6A6A6NMZ7 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.36■□□□□ 0.69
COL6A6A6NMZ7 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A6A6NMZ7 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A6A6NMZ7 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
COL6A6A6NMZ7 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
COL6A6A6NMZ7 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 KRT18P35-201ENST00000510488 1269 ntBASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 AC060766.5-201ENST00000590539 871 ntBASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
COL6A6A6NMZ7 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 EEF1DP3-203ENST00000566025 782 ntBASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 AL353803.4-201ENST00000565882 1934 ntBASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL6A6A6NMZ7 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC19.33■□□□□ 0.69
COL6A6A6NMZ7 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
COL6A6A6NMZ7 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL6A6A6NMZ7 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL6A6A6NMZ7 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A6A6NMZ7 KRT17P3-201ENST00000420566 1262 ntBASIC19.33■□□□□ 0.68
COL6A6A6NMZ7 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.33■□□□□ 0.68
COL6A6A6NMZ7 REXO2-216ENST00000544196 452 ntTSL 3 BASIC19.33■□□□□ 0.68
COL6A6A6NMZ7 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.33■□□□□ 0.68
COL6A6A6NMZ7 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.33■□□□□ 0.68
COL6A6A6NMZ7 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
COL6A6A6NMZ7 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A6A6NMZ7 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC19.33■□□□□ 0.68
COL6A6A6NMZ7 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL6A6A6NMZ7 KRT17P2-201ENST00000300992 1314 ntBASIC19.33■□□□□ 0.68
COL6A6A6NMZ7 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
COL6A6A6NMZ7 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.32■□□□□ 0.68
COL6A6A6NMZ7 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A6A6NMZ7 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A6A6NMZ7 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A6A6NMZ7 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.32■□□□□ 0.68
COL6A6A6NMZ7 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
COL6A6A6NMZ7 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A6A6NMZ7 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A6A6NMZ7 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A6A6NMZ7 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.32■□□□□ 0.68
COL6A6A6NMZ7 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL6A6A6NMZ7 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A6A6NMZ7 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A6A6NMZ7 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.31■□□□□ 0.68
COL6A6A6NMZ7 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
COL6A6A6NMZ7 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
COL6A6A6NMZ7 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms