Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC16.76■□□□□ 0.27
TRAV41A0A0B4J266 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 MIR5787-201ENST00000611784 55 ntBASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC16.75■□□□□ 0.27
TRAV41A0A0B4J266 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 MFF-207ENST00000409565 1548 ntTSL 2 BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC16.74■□□□□ 0.27
TRAV41A0A0B4J266 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 DUX4L2-201ENST00000561772 1275 ntBASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 DUX4L6-201ENST00000626483 1275 ntBASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 DUX4L1-201ENST00000627662 1275 ntBASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 DUX4L8-201ENST00000629013 1275 ntBASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 DUX4L3-201ENST00000630187 1275 ntBASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 DUX4L7-201ENST00000630678 1275 ntBASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 DUX4L5-201ENST00000630834 1275 ntBASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 KRT87P-202ENST00000534226 1464 ntBASIC16.73■□□□□ 0.27
TRAV41A0A0B4J266 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 COX20-201ENST00000366528 568 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 AC104564.3-201ENST00000582367 638 ntBASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 AC026471.6-201ENST00000622954 1905 ntBASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 AC003102.1-202ENST00000563394 1796 ntBASIC16.72■□□□□ 0.27
TRAV41A0A0B4J266 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 AC079834.2-201ENST00000609776 1949 ntBASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 HACD1-201ENST00000326961 773 ntTSL 2 BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
TRAV41A0A0B4J266 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms