Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.58■□□□□ 0.89
PCDHGA1Q9Y5H4 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.58■□□□□ 0.89
PCDHGA1Q9Y5H4 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHGA1Q9Y5H4 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
PCDHGA1Q9Y5H4 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHGA1Q9Y5H4 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.58■□□□□ 0.88
PCDHGA1Q9Y5H4 AC093323.1-202ENST00000635031 2045 ntBASIC20.58■□□□□ 0.88
PCDHGA1Q9Y5H4 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHGA1Q9Y5H4 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
PCDHGA1Q9Y5H4 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHGA1Q9Y5H4 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
PCDHGA1Q9Y5H4 RARRES2P4-201ENST00000514074 484 ntBASIC20.57■□□□□ 0.88
PCDHGA1Q9Y5H4 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHGA1Q9Y5H4 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHGA1Q9Y5H4 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.57■□□□□ 0.88
PCDHGA1Q9Y5H4 AC120498.10-201ENST00000621827 505 ntBASIC20.57■□□□□ 0.88
PCDHGA1Q9Y5H4 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.57■□□□□ 0.88
PCDHGA1Q9Y5H4 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
PCDHGA1Q9Y5H4 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.57■□□□□ 0.88
PCDHGA1Q9Y5H4 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 DUSP5P2-201ENST00000426873 1033 ntBASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 AC093787.1-201ENST00000450396 207 ntBASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 RPS2P52-201ENST00000469610 820 ntBASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 RHEB-204ENST00000472642 900 ntTSL 3 BASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 AC097658.1-201ENST00000475555 843 ntBASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 AC016405.3-201ENST00000607710 860 ntBASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 MYC-209ENST00000641252 345 ntBASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.56■□□□□ 0.88
PCDHGA1Q9Y5H4 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 OR7E47P-201ENST00000546390 1422 ntBASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 BX276092.2-201ENST00000417668 665 ntBASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 GCSHP5-201ENST00000443090 522 ntBASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 AL162412.1-201ENST00000567129 965 ntBASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHGA1Q9Y5H4 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 ESRRAP1-201ENST00000400596 1257 ntBASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 AC098590.1-201ENST00000468126 897 ntBASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 AC083880.1-201ENST00000608266 535 ntBASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 LINC01960-201ENST00000563759 1884 ntBASIC20.54■□□□□ 0.88
PCDHGA1Q9Y5H4 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 AC008175.2-201ENST00000612840 297 ntBASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHGA1Q9Y5H4 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHGA1Q9Y5H4 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHGA1Q9Y5H4 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHGA1Q9Y5H4 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.52■□□□□ 0.88
PCDHGA1Q9Y5H4 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHGA1Q9Y5H4 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHGA1Q9Y5H4 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PCDHGA1Q9Y5H4 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms