Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AP004607.7-201ENST00000527152 1677 ntBASIC19.25■□□□□ 0.67
HIF3AQ9Y2N7 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.25■□□□□ 0.67
HIF3AQ9Y2N7 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HIF3AQ9Y2N7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
HIF3AQ9Y2N7 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.25■□□□□ 0.67
HIF3AQ9Y2N7 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
HIF3AQ9Y2N7 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HIF3AQ9Y2N7 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.24■□□□□ 0.67
HIF3AQ9Y2N7 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HIF3AQ9Y2N7 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HIF3AQ9Y2N7 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HIF3AQ9Y2N7 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HIF3AQ9Y2N7 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HIF3AQ9Y2N7 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.24■□□□□ 0.67
HIF3AQ9Y2N7 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
HIF3AQ9Y2N7 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.24■□□□□ 0.67
HIF3AQ9Y2N7 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.24■□□□□ 0.67
HIF3AQ9Y2N7 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
HIF3AQ9Y2N7 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HIF3AQ9Y2N7 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HIF3AQ9Y2N7 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 AC024257.2-201ENST00000549699 147 ntBASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 AC133561.4-201ENST00000566112 224 ntBASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 AC233992.3-201ENST00000607491 485 ntBASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 AL136162.1-201ENST00000607711 1078 ntBASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.23■□□□□ 0.67
HIF3AQ9Y2N7 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 AC135279.3-201ENST00000610945 1311 ntBASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HIF3AQ9Y2N7 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
HIF3AQ9Y2N7 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HIF3AQ9Y2N7 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HIF3AQ9Y2N7 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HIF3AQ9Y2N7 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HIF3AQ9Y2N7 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.21■□□□□ 0.67
HIF3AQ9Y2N7 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.21■□□□□ 0.67
HIF3AQ9Y2N7 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.21■□□□□ 0.67
HIF3AQ9Y2N7 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.21■□□□□ 0.67
HIF3AQ9Y2N7 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.21■□□□□ 0.67
HIF3AQ9Y2N7 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.2■□□□□ 0.66
HIF3AQ9Y2N7 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 SMUG1P1-201ENST00000590640 811 ntBASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
HIF3AQ9Y2N7 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms