Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC40.81■■■■■ 4.12
SHROOM4Q9ULL8 BAALC-201ENST00000297574 801 ntTSL 3 BASIC40.81■■■■■ 4.12
SHROOM4Q9ULL8 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC40.81■■■■■ 4.12
SHROOM4Q9ULL8 AP001160.3-201ENST00000601484 763 ntBASIC40.81■■■■■ 4.12
SHROOM4Q9ULL8 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC40.81■■■■■ 4.12
SHROOM4Q9ULL8 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC40.81■■■■■ 4.12
SHROOM4Q9ULL8 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC40.8■■■■■ 4.12
SHROOM4Q9ULL8 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC40.8■■■■■ 4.12
SHROOM4Q9ULL8 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC40.8■■■■■ 4.12
SHROOM4Q9ULL8 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC40.8■■■■■ 4.12
SHROOM4Q9ULL8 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC40.79■■■■■ 4.12
SHROOM4Q9ULL8 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC40.79■■■■■ 4.12
SHROOM4Q9ULL8 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC40.79■■■■■ 4.12
SHROOM4Q9ULL8 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC40.79■■■■■ 4.12
SHROOM4Q9ULL8 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC40.79■■■■■ 4.12
SHROOM4Q9ULL8 AC009237.3-201ENST00000393279 1427 ntBASIC40.79■■■■■ 4.12
SHROOM4Q9ULL8 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC40.79■■■■■ 4.12
SHROOM4Q9ULL8 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC40.79■■■■■ 4.12
SHROOM4Q9ULL8 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC40.78■■■■■ 4.12
SHROOM4Q9ULL8 MKRN4P-201ENST00000444706 1521 ntBASIC40.78■■■■■ 4.12
SHROOM4Q9ULL8 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC40.78■■■■■ 4.12
SHROOM4Q9ULL8 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC40.78■■■■■ 4.12
SHROOM4Q9ULL8 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC40.78■■■■■ 4.12
SHROOM4Q9ULL8 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC40.78■■■■■ 4.12
SHROOM4Q9ULL8 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC40.77■■■■■ 4.12
SHROOM4Q9ULL8 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC40.77■■■■■ 4.12
SHROOM4Q9ULL8 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC40.77■■■■■ 4.12
SHROOM4Q9ULL8 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC40.77■■■■■ 4.12
SHROOM4Q9ULL8 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC40.77■■■■■ 4.12
SHROOM4Q9ULL8 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC40.76■■■■■ 4.12
SHROOM4Q9ULL8 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC40.76■■■■■ 4.12
SHROOM4Q9ULL8 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC40.76■■■■■ 4.12
SHROOM4Q9ULL8 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC40.76■■■■■ 4.12
SHROOM4Q9ULL8 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC40.76■■■■■ 4.12
SHROOM4Q9ULL8 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC40.76■■■■■ 4.12
SHROOM4Q9ULL8 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC40.76■■■■■ 4.12
SHROOM4Q9ULL8 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC40.76■■■■■ 4.12
SHROOM4Q9ULL8 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC40.76■■■■■ 4.12
SHROOM4Q9ULL8 GAS7-202ENST00000396115 929 ntTSL 5 BASIC40.76■■■■■ 4.12
SHROOM4Q9ULL8 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC40.76■■■■■ 4.12
SHROOM4Q9ULL8 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC40.76■■■■■ 4.12
SHROOM4Q9ULL8 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC40.76■■■■■ 4.12
SHROOM4Q9ULL8 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC40.75■■■■■ 4.11
SHROOM4Q9ULL8 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC40.75■■■■■ 4.11
SHROOM4Q9ULL8 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC40.75■■■■■ 4.11
SHROOM4Q9ULL8 BET1L-204ENST00000410108 637 ntTSL 3 BASIC40.75■■■■■ 4.11
SHROOM4Q9ULL8 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC40.75■■■■■ 4.11
SHROOM4Q9ULL8 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC40.75■■■■■ 4.11
SHROOM4Q9ULL8 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC40.74■■■■■ 4.11
SHROOM4Q9ULL8 RPS2P4-201ENST00000476944 856 ntBASIC40.74■■■■■ 4.11
SHROOM4Q9ULL8 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC40.74■■■■■ 4.11
SHROOM4Q9ULL8 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC40.74■■■■■ 4.11
SHROOM4Q9ULL8 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC40.73■■■■■ 4.11
SHROOM4Q9ULL8 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC40.73■■■■■ 4.11
SHROOM4Q9ULL8 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC40.73■■■■■ 4.11
SHROOM4Q9ULL8 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC40.73■■■■■ 4.11
SHROOM4Q9ULL8 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC40.73■■■■■ 4.11
SHROOM4Q9ULL8 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC40.73■■■■■ 4.11
SHROOM4Q9ULL8 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC40.73■■■■■ 4.11
SHROOM4Q9ULL8 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC40.72■■■■■ 4.11
SHROOM4Q9ULL8 OR10C1-204ENST00000622521 1039 ntBASIC40.72■■■■■ 4.11
SHROOM4Q9ULL8 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC40.72■■■■■ 4.11
SHROOM4Q9ULL8 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC40.71■■■■■ 4.11
SHROOM4Q9ULL8 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC40.71■■■■■ 4.11
SHROOM4Q9ULL8 RHEB-204ENST00000472642 900 ntTSL 3 BASIC40.71■■■■■ 4.11
SHROOM4Q9ULL8 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC40.71■■■■■ 4.11
SHROOM4Q9ULL8 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC40.7■■■■■ 4.11
SHROOM4Q9ULL8 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC40.7■■■■■ 4.11
SHROOM4Q9ULL8 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC40.7■■■■■ 4.11
SHROOM4Q9ULL8 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC40.7■■■■■ 4.11
SHROOM4Q9ULL8 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC40.7■■■■■ 4.11
SHROOM4Q9ULL8 AC068338.2-201ENST00000563278 1430 ntBASIC40.7■■■■■ 4.11
SHROOM4Q9ULL8 AC138907.5-202ENST00000569484 235 ntBASIC40.7■■■■■ 4.11
SHROOM4Q9ULL8 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC40.7■■■■■ 4.11
SHROOM4Q9ULL8 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC40.69■■■■■ 4.1
SHROOM4Q9ULL8 LINC00526-201ENST00000581067 1875 ntBASIC40.69■■■■■ 4.1
SHROOM4Q9ULL8 COMT-203ENST00000403184 2217 ntTSL 2 BASIC40.69■■■■■ 4.1
SHROOM4Q9ULL8 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC40.69■■■■■ 4.1
SHROOM4Q9ULL8 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC40.69■■■■■ 4.1
SHROOM4Q9ULL8 ESRRAP1-201ENST00000400596 1257 ntBASIC40.69■■■■■ 4.1
SHROOM4Q9ULL8 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC40.69■■■■■ 4.1
SHROOM4Q9ULL8 AC079089.2-201ENST00000531211 1277 ntBASIC40.69■■■■■ 4.1
SHROOM4Q9ULL8 PHB2-213ENST00000546111 858 ntTSL 2 BASIC40.69■■■■■ 4.1
SHROOM4Q9ULL8 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC40.69■■■■■ 4.1
SHROOM4Q9ULL8 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC40.69■■■■■ 4.1
SHROOM4Q9ULL8 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC40.68■■■■■ 4.1
SHROOM4Q9ULL8 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC40.68■■■■■ 4.1
SHROOM4Q9ULL8 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC40.68■■■■■ 4.1
SHROOM4Q9ULL8 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC40.68■■■■■ 4.1
SHROOM4Q9ULL8 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC40.68■■■■■ 4.1
SHROOM4Q9ULL8 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC40.68■■■■■ 4.1
SHROOM4Q9ULL8 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC40.67■■■■■ 4.1
SHROOM4Q9ULL8 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC40.67■■■■■ 4.1
SHROOM4Q9ULL8 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC40.67■■■■■ 4.1
SHROOM4Q9ULL8 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC40.67■■■■■ 4.1
SHROOM4Q9ULL8 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC40.66■■■■■ 4.1
SHROOM4Q9ULL8 AC055733.4-201ENST00000638462 1354 ntBASIC40.66■■■■■ 4.1
SHROOM4Q9ULL8 USP36-216ENST00000589424 970 ntTSL 5 BASIC40.66■■■■■ 4.1
SHROOM4Q9ULL8 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC40.66■■■■■ 4.1
SHROOM4Q9ULL8 MMD2-204ENST00000612910 778 ntTSL 5 BASIC40.66■■■■■ 4.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms