Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC133561.4-201ENST00000566112 224 ntBASIC19.03■□□□□ 0.64
VSX1Q9NZR4 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VSX1Q9NZR4 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 AC233992.3-201ENST00000607491 485 ntBASIC19.02■□□□□ 0.64
VSX1Q9NZR4 AL136162.1-201ENST00000607711 1078 ntBASIC19.02■□□□□ 0.64
VSX1Q9NZR4 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.02■□□□□ 0.64
VSX1Q9NZR4 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.02■□□□□ 0.63
VSX1Q9NZR4 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
VSX1Q9NZR4 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
VSX1Q9NZR4 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.01■□□□□ 0.63
VSX1Q9NZR4 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VSX1Q9NZR4 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.01■□□□□ 0.63
VSX1Q9NZR4 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.01■□□□□ 0.63
VSX1Q9NZR4 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.01■□□□□ 0.63
VSX1Q9NZR4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC19.01■□□□□ 0.63
VSX1Q9NZR4 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
VSX1Q9NZR4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VSX1Q9NZR4 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
VSX1Q9NZR4 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
VSX1Q9NZR4 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.01■□□□□ 0.63
VSX1Q9NZR4 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VSX1Q9NZR4 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
VSX1Q9NZR4 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VSX1Q9NZR4 AC135279.3-201ENST00000610945 1311 ntBASIC19■□□□□ 0.63
VSX1Q9NZR4 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19■□□□□ 0.63
VSX1Q9NZR4 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VSX1Q9NZR4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
VSX1Q9NZR4 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VSX1Q9NZR4 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VSX1Q9NZR4 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19■□□□□ 0.63
VSX1Q9NZR4 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19■□□□□ 0.63
VSX1Q9NZR4 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19■□□□□ 0.63
VSX1Q9NZR4 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19■□□□□ 0.63
VSX1Q9NZR4 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VSX1Q9NZR4 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
VSX1Q9NZR4 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
VSX1Q9NZR4 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
VSX1Q9NZR4 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 SMUG1P1-201ENST00000590640 811 ntBASIC18.98■□□□□ 0.63
VSX1Q9NZR4 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
VSX1Q9NZR4 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.97■□□□□ 0.63
VSX1Q9NZR4 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms