Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AC233723.2-201ENST00000623798 2106 ntBASIC21.34■■□□□ 1.01
TM9SF3Q9HD45 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TM9SF3Q9HD45 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TM9SF3Q9HD45 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
TM9SF3Q9HD45 AC007322.1-201ENST00000426983 750 ntBASIC21.34■■□□□ 1.01
TM9SF3Q9HD45 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.34■■□□□ 1.01
TM9SF3Q9HD45 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC21.34■■□□□ 1.01
TM9SF3Q9HD45 AC092068.2-201ENST00000590491 1708 ntBASIC21.34■■□□□ 1.01
TM9SF3Q9HD45 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
TM9SF3Q9HD45 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
TM9SF3Q9HD45 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TM9SF3Q9HD45 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TM9SF3Q9HD45 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.33■■□□□ 1.01
TM9SF3Q9HD45 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.33■■□□□ 1.01
TM9SF3Q9HD45 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
TM9SF3Q9HD45 AC083906.2-201ENST00000511578 360 ntBASIC21.33■■□□□ 1.01
TM9SF3Q9HD45 AC079089.2-201ENST00000531211 1277 ntBASIC21.33■■□□□ 1.01
TM9SF3Q9HD45 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TM9SF3Q9HD45 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
TM9SF3Q9HD45 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.33■■□□□ 1.01
TM9SF3Q9HD45 MYCNOS-205ENST00000641950 531 ntBASIC21.33■■□□□ 1.01
TM9SF3Q9HD45 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TM9SF3Q9HD45 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
TM9SF3Q9HD45 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.33■■□□□ 1
TM9SF3Q9HD45 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.33■■□□□ 1
TM9SF3Q9HD45 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.32■■□□□ 1
TM9SF3Q9HD45 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TM9SF3Q9HD45 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TM9SF3Q9HD45 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.32■■□□□ 1
TM9SF3Q9HD45 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
TM9SF3Q9HD45 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.32■■□□□ 1
TM9SF3Q9HD45 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
TM9SF3Q9HD45 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
TM9SF3Q9HD45 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.32■■□□□ 1
TM9SF3Q9HD45 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.32■■□□□ 1
TM9SF3Q9HD45 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.32■■□□□ 1
TM9SF3Q9HD45 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.32■■□□□ 1
TM9SF3Q9HD45 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
TM9SF3Q9HD45 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.32■■□□□ 1
TM9SF3Q9HD45 AC142086.2-201ENST00000569753 217 ntBASIC21.32■■□□□ 1
TM9SF3Q9HD45 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.32■■□□□ 1
TM9SF3Q9HD45 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.32■■□□□ 1
TM9SF3Q9HD45 AC005181.1-201ENST00000604782 1256 ntBASIC21.32■■□□□ 1
TM9SF3Q9HD45 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.32■■□□□ 1
TM9SF3Q9HD45 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.32■■□□□ 1
TM9SF3Q9HD45 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
TM9SF3Q9HD45 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.32■■□□□ 1
TM9SF3Q9HD45 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.32■■□□□ 1
TM9SF3Q9HD45 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
TM9SF3Q9HD45 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
TM9SF3Q9HD45 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
TM9SF3Q9HD45 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
TM9SF3Q9HD45 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
TM9SF3Q9HD45 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.31■■□□□ 1
TM9SF3Q9HD45 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TM9SF3Q9HD45 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.31■■□□□ 1
TM9SF3Q9HD45 LINC01960-201ENST00000563759 1884 ntBASIC21.31■■□□□ 1
TM9SF3Q9HD45 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
TM9SF3Q9HD45 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.31■■□□□ 1
TM9SF3Q9HD45 TSPY6P-201ENST00000448518 926 ntBASIC21.31■■□□□ 1
TM9SF3Q9HD45 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.31■■□□□ 1
TM9SF3Q9HD45 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.31■■□□□ 1
TM9SF3Q9HD45 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TM9SF3Q9HD45 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
TM9SF3Q9HD45 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.3■■□□□ 1
TM9SF3Q9HD45 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TM9SF3Q9HD45 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
TM9SF3Q9HD45 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TM9SF3Q9HD45 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TM9SF3Q9HD45 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
TM9SF3Q9HD45 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.3■■□□□ 1
TM9SF3Q9HD45 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.3■■□□□ 1
TM9SF3Q9HD45 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.3■■□□□ 1
TM9SF3Q9HD45 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.3■■□□□ 1
TM9SF3Q9HD45 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.3■■□□□ 1
TM9SF3Q9HD45 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TM9SF3Q9HD45 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
TM9SF3Q9HD45 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.3■■□□□ 1
TM9SF3Q9HD45 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.29■■□□□ 1
TM9SF3Q9HD45 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.29■■□□□ 1
TM9SF3Q9HD45 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
TM9SF3Q9HD45 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TM9SF3Q9HD45 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TM9SF3Q9HD45 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.28■■□□□ 1
TM9SF3Q9HD45 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TM9SF3Q9HD45 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TM9SF3Q9HD45 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
TM9SF3Q9HD45 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TM9SF3Q9HD45 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.28■■□□□ 1
TM9SF3Q9HD45 SLC7A5P2-201ENST00000553010 536 ntBASIC21.28■■□□□ 1
TM9SF3Q9HD45 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
TM9SF3Q9HD45 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.28■■□□□ 1
TM9SF3Q9HD45 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.28■■□□□ 1
TM9SF3Q9HD45 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TM9SF3Q9HD45 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
TM9SF3Q9HD45 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TM9SF3Q9HD45 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.28■■□□□ 1
TM9SF3Q9HD45 AP004607.7-201ENST00000527152 1677 ntBASIC21.28■■□□□ 1
TM9SF3Q9HD45 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
TM9SF3Q9HD45 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms