Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.3■■□□□ 1
LYSMD1Q96S90 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.3■■□□□ 1
LYSMD1Q96S90 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.3■■□□□ 1
LYSMD1Q96S90 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
LYSMD1Q96S90 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.3■■□□□ 1
LYSMD1Q96S90 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.3■■□□□ 1
LYSMD1Q96S90 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LYSMD1Q96S90 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.29■■□□□ 1
LYSMD1Q96S90 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.29■■□□□ 1
LYSMD1Q96S90 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
LYSMD1Q96S90 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LYSMD1Q96S90 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LYSMD1Q96S90 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LYSMD1Q96S90 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LYSMD1Q96S90 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.29■■□□□ 1
LYSMD1Q96S90 AL162430.1-201ENST00000480705 870 ntBASIC21.29■■□□□ 1
LYSMD1Q96S90 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.29■■□□□ 1
LYSMD1Q96S90 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.29■■□□□ 1
LYSMD1Q96S90 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.29■■□□□ 1
LYSMD1Q96S90 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.29■■□□□ 1
LYSMD1Q96S90 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC21.29■■□□□ 1
LYSMD1Q96S90 KRT18P61-201ENST00000585825 1298 ntBASIC21.29■■□□□ 1
LYSMD1Q96S90 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
LYSMD1Q96S90 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
LYSMD1Q96S90 AC010542.4-201ENST00000563151 1910 ntBASIC21.29■■□□□ 1
LYSMD1Q96S90 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.29■■□□□ 1
LYSMD1Q96S90 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LYSMD1Q96S90 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.28■■□□□ 1
LYSMD1Q96S90 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.28■■□□□ 1
LYSMD1Q96S90 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LYSMD1Q96S90 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.28■■□□□ 1
LYSMD1Q96S90 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.28■■□□□ 1
LYSMD1Q96S90 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.28■■□□□ 1
LYSMD1Q96S90 KRT18P5-201ENST00000436075 1291 ntBASIC21.28■■□□□ 1
LYSMD1Q96S90 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.28■■□□□ 1
LYSMD1Q96S90 NTF6G-201ENST00000591094 616 ntBASIC21.28■■□□□ 1
LYSMD1Q96S90 AC053503.5-201ENST00000601508 636 ntBASIC21.28■■□□□ 1
LYSMD1Q96S90 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LYSMD1Q96S90 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.28■■□□□ 1
LYSMD1Q96S90 AC004854.2-201ENST00000608450 1441 ntBASIC21.28■■□□□ 1
LYSMD1Q96S90 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.28■■□□□ 1
LYSMD1Q96S90 AC079834.2-201ENST00000609776 1949 ntBASIC21.27■■□□□ 1
LYSMD1Q96S90 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LYSMD1Q96S90 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.27■■□□□ 1
LYSMD1Q96S90 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.27■■□□□ 1
LYSMD1Q96S90 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.27■■□□□ 1
LYSMD1Q96S90 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC21.27■■□□□ 1
LYSMD1Q96S90 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC21.27■■□□□ 1
LYSMD1Q96S90 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.27■■□□□ 1
LYSMD1Q96S90 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LYSMD1Q96S90 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.27■■□□□ 1
LYSMD1Q96S90 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.27■■□□□ 1
LYSMD1Q96S90 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.27■■□□□ 1
LYSMD1Q96S90 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LYSMD1Q96S90 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LYSMD1Q96S90 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
LYSMD1Q96S90 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LYSMD1Q96S90 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.26■□□□□ 0.99
LYSMD1Q96S90 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.26■□□□□ 0.99
LYSMD1Q96S90 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LYSMD1Q96S90 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LYSMD1Q96S90 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.26■□□□□ 0.99
LYSMD1Q96S90 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LYSMD1Q96S90 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LYSMD1Q96S90 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LYSMD1Q96S90 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LYSMD1Q96S90 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
LYSMD1Q96S90 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LYSMD1Q96S90 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LYSMD1Q96S90 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.24■□□□□ 0.99
LYSMD1Q96S90 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LYSMD1Q96S90 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.24■□□□□ 0.99
LYSMD1Q96S90 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
LYSMD1Q96S90 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
LYSMD1Q96S90 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.24■□□□□ 0.99
LYSMD1Q96S90 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.24■□□□□ 0.99
LYSMD1Q96S90 AC104564.3-201ENST00000582367 638 ntBASIC21.24■□□□□ 0.99
LYSMD1Q96S90 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
LYSMD1Q96S90 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LYSMD1Q96S90 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
LYSMD1Q96S90 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LYSMD1Q96S90 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LYSMD1Q96S90 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LYSMD1Q96S90 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.23■□□□□ 0.99
LYSMD1Q96S90 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms