Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LMX1AQ8TE12 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 CNN2P6-201ENST00000439038 900 ntBASIC20.84■□□□□ 0.93
LMX1AQ8TE12 TSPY6P-201ENST00000448518 926 ntBASIC20.84■□□□□ 0.93
LMX1AQ8TE12 SLC7A5P2-201ENST00000553010 536 ntBASIC20.84■□□□□ 0.93
LMX1AQ8TE12 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.84■□□□□ 0.93
LMX1AQ8TE12 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 AC139530.1-201ENST00000575312 1977 ntBASIC20.83■□□□□ 0.93
LMX1AQ8TE12 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
LMX1AQ8TE12 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.83■□□□□ 0.92
LMX1AQ8TE12 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LMX1AQ8TE12 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LMX1AQ8TE12 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LMX1AQ8TE12 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC20.82■□□□□ 0.92
LMX1AQ8TE12 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LMX1AQ8TE12 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LMX1AQ8TE12 SLC29A4P1-201ENST00000398760 971 ntBASIC20.82■□□□□ 0.92
LMX1AQ8TE12 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
LMX1AQ8TE12 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.82■□□□□ 0.92
LMX1AQ8TE12 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LMX1AQ8TE12 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LMX1AQ8TE12 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LMX1AQ8TE12 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.81■□□□□ 0.92
LMX1AQ8TE12 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.81■□□□□ 0.92
LMX1AQ8TE12 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
LMX1AQ8TE12 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20.81■□□□□ 0.92
LMX1AQ8TE12 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LMX1AQ8TE12 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LMX1AQ8TE12 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.81■□□□□ 0.92
LMX1AQ8TE12 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LMX1AQ8TE12 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
LMX1AQ8TE12 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LMX1AQ8TE12 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.8■□□□□ 0.92
LMX1AQ8TE12 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LMX1AQ8TE12 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
LMX1AQ8TE12 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.8■□□□□ 0.92
LMX1AQ8TE12 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LMX1AQ8TE12 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LMX1AQ8TE12 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LMX1AQ8TE12 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
LMX1AQ8TE12 TERF1P5-201ENST00000477545 1207 ntBASIC20.8■□□□□ 0.92
LMX1AQ8TE12 AF201337.1-201ENST00000520239 748 ntBASIC20.8■□□□□ 0.92
LMX1AQ8TE12 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.8■□□□□ 0.92
LMX1AQ8TE12 AC142086.2-201ENST00000569753 217 ntBASIC20.8■□□□□ 0.92
LMX1AQ8TE12 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.8■□□□□ 0.92
LMX1AQ8TE12 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LMX1AQ8TE12 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 GUSBP6-202ENST00000438529 1198 ntBASIC20.79■□□□□ 0.92
LMX1AQ8TE12 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 SLC7A5P1-201ENST00000568957 537 ntBASIC20.79■□□□□ 0.92
LMX1AQ8TE12 AC105036.2-201ENST00000569468 176 ntBASIC20.79■□□□□ 0.92
LMX1AQ8TE12 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 AC008175.2-201ENST00000612840 297 ntBASIC20.79■□□□□ 0.92
LMX1AQ8TE12 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 AC013268.1-206ENST00000638368 961 ntBASIC20.79■□□□□ 0.92
LMX1AQ8TE12 AC112229.1-201ENST00000639295 961 ntBASIC20.79■□□□□ 0.92
LMX1AQ8TE12 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LMX1AQ8TE12 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LMX1AQ8TE12 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LMX1AQ8TE12 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
LMX1AQ8TE12 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms