Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.14■□□□□ 0.98
NUDCD3Q8IVD9 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
NUDCD3Q8IVD9 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NUDCD3Q8IVD9 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
NUDCD3Q8IVD9 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
NUDCD3Q8IVD9 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NUDCD3Q8IVD9 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
NUDCD3Q8IVD9 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
NUDCD3Q8IVD9 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
NUDCD3Q8IVD9 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.14■□□□□ 0.97
NUDCD3Q8IVD9 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.14■□□□□ 0.97
NUDCD3Q8IVD9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
NUDCD3Q8IVD9 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
NUDCD3Q8IVD9 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
NUDCD3Q8IVD9 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
NUDCD3Q8IVD9 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
NUDCD3Q8IVD9 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
NUDCD3Q8IVD9 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 AC010997.5-201ENST00000609182 354 ntBASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.13■□□□□ 0.97
NUDCD3Q8IVD9 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 Z92544.1-202ENST00000571933 1220 ntBASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
NUDCD3Q8IVD9 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 AC133637.1-201ENST00000624115 1537 ntBASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 AL451085.2-201ENST00000605085 799 ntBASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 MIR4787-201ENST00000607364 84 ntBASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUDCD3Q8IVD9 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 AC241377.3-202ENST00000626088 1088 ntBASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 AC241585.3-202ENST00000628937 1088 ntBASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 AC245100.8-202ENST00000629247 1058 ntBASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUDCD3Q8IVD9 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 OXCT2P1-201ENST00000447263 1535 ntBASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 AL117332.1-201ENST00000622628 974 ntBASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUDCD3Q8IVD9 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms