Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SH3RF1Q7Z6J0 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC24.57■■□□□ 1.52
SH3RF1Q7Z6J0 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SH3RF1Q7Z6J0 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 MFF-208ENST00000409616 1247 ntTSL 5 BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SH3RF1Q7Z6J0 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
SH3RF1Q7Z6J0 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SH3RF1Q7Z6J0 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SH3RF1Q7Z6J0 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
SH3RF1Q7Z6J0 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SH3RF1Q7Z6J0 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SH3RF1Q7Z6J0 TSPY20P-201ENST00000450910 630 ntBASIC24.54■■□□□ 1.52
SH3RF1Q7Z6J0 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC24.54■■□□□ 1.52
SH3RF1Q7Z6J0 CD99P1-205ENST00000527459 561 ntBASIC24.54■■□□□ 1.52
SH3RF1Q7Z6J0 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
SH3RF1Q7Z6J0 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
SH3RF1Q7Z6J0 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC24.54■■□□□ 1.52
SH3RF1Q7Z6J0 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC24.54■■□□□ 1.52
SH3RF1Q7Z6J0 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC24.54■■□□□ 1.52
SH3RF1Q7Z6J0 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
SH3RF1Q7Z6J0 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SH3RF1Q7Z6J0 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SH3RF1Q7Z6J0 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
SH3RF1Q7Z6J0 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
SH3RF1Q7Z6J0 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
SH3RF1Q7Z6J0 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC24.53■■□□□ 1.52
SH3RF1Q7Z6J0 MIR663A-201ENST00000385250 93 ntBASIC24.53■■□□□ 1.52
SH3RF1Q7Z6J0 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC24.53■■□□□ 1.52
SH3RF1Q7Z6J0 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC24.53■■□□□ 1.52
SH3RF1Q7Z6J0 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC24.53■■□□□ 1.52
SH3RF1Q7Z6J0 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SH3RF1Q7Z6J0 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC24.52■■□□□ 1.52
SH3RF1Q7Z6J0 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SH3RF1Q7Z6J0 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SH3RF1Q7Z6J0 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC24.52■■□□□ 1.52
SH3RF1Q7Z6J0 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC24.52■■□□□ 1.52
SH3RF1Q7Z6J0 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
SH3RF1Q7Z6J0 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC24.52■■□□□ 1.52
SH3RF1Q7Z6J0 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
SH3RF1Q7Z6J0 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC24.51■■□□□ 1.51
SH3RF1Q7Z6J0 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC24.51■■□□□ 1.51
SH3RF1Q7Z6J0 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
SH3RF1Q7Z6J0 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
SH3RF1Q7Z6J0 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
SH3RF1Q7Z6J0 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
SH3RF1Q7Z6J0 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC24.51■■□□□ 1.51
SH3RF1Q7Z6J0 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
SH3RF1Q7Z6J0 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
SH3RF1Q7Z6J0 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
SH3RF1Q7Z6J0 STX4-202ENST00000394998 1498 ntTSL 2 BASIC24.51■■□□□ 1.51
SH3RF1Q7Z6J0 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
SH3RF1Q7Z6J0 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
SH3RF1Q7Z6J0 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SH3RF1Q7Z6J0 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC24.5■■□□□ 1.51
SH3RF1Q7Z6J0 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC24.5■■□□□ 1.51
SH3RF1Q7Z6J0 AC011767.1-201ENST00000617410 1153 ntBASIC24.5■■□□□ 1.51
SH3RF1Q7Z6J0 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SH3RF1Q7Z6J0 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
SH3RF1Q7Z6J0 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC24.5■■□□□ 1.51
SH3RF1Q7Z6J0 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SH3RF1Q7Z6J0 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SH3RF1Q7Z6J0 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
SH3RF1Q7Z6J0 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
SH3RF1Q7Z6J0 GPX1P1-201ENST00000388829 606 ntBASIC24.49■■□□□ 1.51
SH3RF1Q7Z6J0 APTR-205ENST00000447009 902 ntTSL 2 BASIC24.49■■□□□ 1.51
SH3RF1Q7Z6J0 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC24.49■■□□□ 1.51
SH3RF1Q7Z6J0 GAMT-205ENST00000640762 751 ntTSL 5 BASIC24.49■■□□□ 1.51
SH3RF1Q7Z6J0 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
SH3RF1Q7Z6J0 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms