Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC14.82□□□□□ -0.04
CKS1BP61024 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC14.82□□□□□ -0.04
CKS1BP61024 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC14.82□□□□□ -0.04
CKS1BP61024 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC14.82□□□□□ -0.04
CKS1BP61024 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
CKS1BP61024 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC14.82□□□□□ -0.04
CKS1BP61024 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CKS1BP61024 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CKS1BP61024 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
CKS1BP61024 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
CKS1BP61024 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
CKS1BP61024 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CKS1BP61024 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC14.81□□□□□ -0.04
CKS1BP61024 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CKS1BP61024 AC004448.1-201ENST00000458332 883 ntBASIC14.81□□□□□ -0.04
CKS1BP61024 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC14.81□□□□□ -0.04
CKS1BP61024 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
CKS1BP61024 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CKS1BP61024 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CKS1BP61024 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC14.81□□□□□ -0.04
CKS1BP61024 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CKS1BP61024 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CKS1BP61024 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CKS1BP61024 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
CKS1BP61024 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
CKS1BP61024 AC092053.2-201ENST00000640557 1818 ntBASIC14.8□□□□□ -0.04
CKS1BP61024 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 BID-212ENST00000614949 1988 ntTSL 5 BASIC14.8□□□□□ -0.04
CKS1BP61024 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
CKS1BP61024 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CKS1BP61024 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC14.8□□□□□ -0.04
CKS1BP61024 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CKS1BP61024 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
CKS1BP61024 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
CKS1BP61024 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CKS1BP61024 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
CKS1BP61024 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC14.79□□□□□ -0.04
CKS1BP61024 KRT18P24-201ENST00000344739 1156 ntBASIC14.79□□□□□ -0.04
CKS1BP61024 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CKS1BP61024 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CKS1BP61024 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
CKS1BP61024 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC14.79□□□□□ -0.04
CKS1BP61024 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
CKS1BP61024 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC14.79□□□□□ -0.04
CKS1BP61024 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
CKS1BP61024 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC14.79□□□□□ -0.04
CKS1BP61024 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC14.79□□□□□ -0.04
CKS1BP61024 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC14.79□□□□□ -0.04
CKS1BP61024 AC087289.5-201ENST00000586076 3175 ntBASIC14.79□□□□□ -0.04
CKS1BP61024 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
CKS1BP61024 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
CKS1BP61024 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC14.78□□□□□ -0.04
CKS1BP61024 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC14.78□□□□□ -0.04
CKS1BP61024 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC14.78□□□□□ -0.04
CKS1BP61024 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CKS1BP61024 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 AC090340.1-201ENST00000620778 4980 ntBASIC14.78□□□□□ -0.04
CKS1BP61024 AC106820.2-201ENST00000563775 3264 ntBASIC14.78□□□□□ -0.04
CKS1BP61024 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC14.78□□□□□ -0.04
CKS1BP61024 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 MIR4281-201ENST00000580852 62 ntBASIC14.78□□□□□ -0.04
CKS1BP61024 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CKS1BP61024 AC074183.2-201ENST00000623112 922 ntBASIC14.78□□□□□ -0.04
CKS1BP61024 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC14.78□□□□□ -0.04
CKS1BP61024 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CKS1BP61024 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms