Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLRN1P58418 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLRN1P58418 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CLRN1P58418 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLRN1P58418 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.05■□□□□ 0.64
CLRN1P58418 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLRN1P58418 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CLRN1P58418 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLRN1P58418 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
CLRN1P58418 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLRN1P58418 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.05■□□□□ 0.64
CLRN1P58418 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CLRN1P58418 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CLRN1P58418 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CLRN1P58418 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLRN1P58418 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.04■□□□□ 0.64
CLRN1P58418 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLRN1P58418 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLRN1P58418 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLRN1P58418 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLRN1P58418 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.04■□□□□ 0.64
CLRN1P58418 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.04■□□□□ 0.64
CLRN1P58418 SMUG1P1-201ENST00000590640 811 ntBASIC19.04■□□□□ 0.64
CLRN1P58418 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CLRN1P58418 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLRN1P58418 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.04■□□□□ 0.64
CLRN1P58418 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.04■□□□□ 0.64
CLRN1P58418 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CLRN1P58418 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CLRN1P58418 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN1P58418 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CLRN1P58418 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC19.03■□□□□ 0.64
CLRN1P58418 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN1P58418 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN1P58418 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.03■□□□□ 0.64
CLRN1P58418 LHPP-203ENST00000392757 840 ntTSL 3 BASIC19.03■□□□□ 0.64
CLRN1P58418 AC142381.2-201ENST00000566120 298 ntBASIC19.03■□□□□ 0.64
CLRN1P58418 AL136967.2-201ENST00000623968 743 ntBASIC19.03■□□□□ 0.64
CLRN1P58418 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN1P58418 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN1P58418 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN1P58418 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN1P58418 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CLRN1P58418 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLRN1P58418 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLRN1P58418 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CLRN1P58418 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CLRN1P58418 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLRN1P58418 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.02■□□□□ 0.64
CLRN1P58418 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.02■□□□□ 0.64
CLRN1P58418 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLRN1P58418 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLRN1P58418 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLRN1P58418 AC104564.3-201ENST00000582367 638 ntBASIC19.02■□□□□ 0.64
CLRN1P58418 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.02■□□□□ 0.64
CLRN1P58418 AL031432.3-201ENST00000607698 485 ntBASIC19.02■□□□□ 0.64
CLRN1P58418 AC105233.4-201ENST00000642045 216 ntBASIC19.02■□□□□ 0.64
CLRN1P58418 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.02■□□□□ 0.64
CLRN1P58418 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLRN1P58418 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
CLRN1P58418 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CLRN1P58418 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CLRN1P58418 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CLRN1P58418 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.01■□□□□ 0.63
CLRN1P58418 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.01■□□□□ 0.63
CLRN1P58418 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN1P58418 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN1P58418 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.01■□□□□ 0.63
CLRN1P58418 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN1P58418 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN1P58418 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.01■□□□□ 0.63
CLRN1P58418 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN1P58418 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.01■□□□□ 0.63
CLRN1P58418 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CLRN1P58418 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN1P58418 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN1P58418 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CLRN1P58418 AC026471.6-201ENST00000622954 1905 ntBASIC19.01■□□□□ 0.63
CLRN1P58418 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN1P58418 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN1P58418 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN1P58418 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN1P58418 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
CLRN1P58418 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN1P58418 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLRN1P58418 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.01■□□□□ 0.63
CLRN1P58418 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLRN1P58418 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLRN1P58418 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLRN1P58418 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLRN1P58418 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19■□□□□ 0.63
CLRN1P58418 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19■□□□□ 0.63
CLRN1P58418 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19■□□□□ 0.63
CLRN1P58418 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19■□□□□ 0.63
CLRN1P58418 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLRN1P58418 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC19■□□□□ 0.63
CLRN1P58418 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19■□□□□ 0.63
CLRN1P58418 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLRN1P58418 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLRN1P58418 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms