Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.97■■□□□ 1.11
NEK3P51956 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NEK3P51956 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NEK3P51956 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
NEK3P51956 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.97■■□□□ 1.11
NEK3P51956 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
NEK3P51956 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
NEK3P51956 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NEK3P51956 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
NEK3P51956 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.96■■□□□ 1.11
NEK3P51956 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
NEK3P51956 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.96■■□□□ 1.11
NEK3P51956 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
NEK3P51956 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.96■■□□□ 1.11
NEK3P51956 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
NEK3P51956 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
NEK3P51956 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.96■■□□□ 1.11
NEK3P51956 AC010542.4-201ENST00000563151 1910 ntBASIC21.96■■□□□ 1.11
NEK3P51956 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
NEK3P51956 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.95■■□□□ 1.1
NEK3P51956 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
NEK3P51956 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
NEK3P51956 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.95■■□□□ 1.1
NEK3P51956 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC21.95■■□□□ 1.1
NEK3P51956 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.95■■□□□ 1.1
NEK3P51956 PARL-206ENST00000435888 1098 ntTSL 5 BASIC21.95■■□□□ 1.1
NEK3P51956 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.95■■□□□ 1.1
NEK3P51956 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.95■■□□□ 1.1
NEK3P51956 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
NEK3P51956 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
NEK3P51956 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
NEK3P51956 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
NEK3P51956 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NEK3P51956 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
NEK3P51956 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
NEK3P51956 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NEK3P51956 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC21.94■■□□□ 1.1
NEK3P51956 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NEK3P51956 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NEK3P51956 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
NEK3P51956 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
NEK3P51956 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
NEK3P51956 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
NEK3P51956 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.94■■□□□ 1.1
NEK3P51956 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.94■■□□□ 1.1
NEK3P51956 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NEK3P51956 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
NEK3P51956 FAM99A-202ENST00000538190 1989 ntBASIC21.94■■□□□ 1.1
NEK3P51956 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
NEK3P51956 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
NEK3P51956 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
NEK3P51956 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
NEK3P51956 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
NEK3P51956 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
NEK3P51956 OXCT2P1-201ENST00000447263 1535 ntBASIC21.93■■□□□ 1.1
NEK3P51956 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.93■■□□□ 1.1
NEK3P51956 AC092666.2-201ENST00000613287 246 ntBASIC21.93■■□□□ 1.1
NEK3P51956 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.93■■□□□ 1.1
NEK3P51956 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.93■■□□□ 1.1
NEK3P51956 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.92■■□□□ 1.1
NEK3P51956 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
NEK3P51956 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.92■■□□□ 1.1
NEK3P51956 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
NEK3P51956 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
NEK3P51956 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
NEK3P51956 LINC02228-203ENST00000641970 1355 ntBASIC21.92■■□□□ 1.1
NEK3P51956 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
NEK3P51956 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.92■■□□□ 1.1
NEK3P51956 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
NEK3P51956 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
NEK3P51956 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC21.92■■□□□ 1.1
NEK3P51956 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.92■■□□□ 1.1
NEK3P51956 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.91■■□□□ 1.1
NEK3P51956 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
NEK3P51956 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC21.91■■□□□ 1.1
NEK3P51956 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
NEK3P51956 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.91■■□□□ 1.1
NEK3P51956 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.91■■□□□ 1.1
NEK3P51956 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.91■■□□□ 1.1
NEK3P51956 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.91■■□□□ 1.1
NEK3P51956 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.91■■□□□ 1.1
NEK3P51956 CCDC92B-201ENST00000575506 885 ntBASIC21.91■■□□□ 1.1
NEK3P51956 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.91■■□□□ 1.1
NEK3P51956 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
NEK3P51956 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
NEK3P51956 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
NEK3P51956 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
NEK3P51956 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
NEK3P51956 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.9■■□□□ 1.1
NEK3P51956 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
NEK3P51956 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.9■■□□□ 1.1
NEK3P51956 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
NEK3P51956 DUX4L2-201ENST00000561772 1275 ntBASIC21.9■■□□□ 1.1
NEK3P51956 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.9■■□□□ 1.1
NEK3P51956 DUX4L6-201ENST00000626483 1275 ntBASIC21.9■■□□□ 1.1
NEK3P51956 DUX4L1-201ENST00000627662 1275 ntBASIC21.9■■□□□ 1.1
NEK3P51956 DUX4L8-201ENST00000629013 1275 ntBASIC21.9■■□□□ 1.1
NEK3P51956 DUX4L3-201ENST00000630187 1275 ntBASIC21.9■■□□□ 1.1
NEK3P51956 DUX4L7-201ENST00000630678 1275 ntBASIC21.9■■□□□ 1.1
NEK3P51956 DUX4L5-201ENST00000630834 1275 ntBASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms