Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CXCL12P48061 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
CXCL12P48061 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CXCL12P48061 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CXCL12P48061 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
CXCL12P48061 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CXCL12P48061 AL596275.1-201ENST00000423464 877 ntBASIC21.45■■□□□ 1.02
CXCL12P48061 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.45■■□□□ 1.02
CXCL12P48061 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC21.45■■□□□ 1.02
CXCL12P48061 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
CXCL12P48061 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.45■■□□□ 1.02
CXCL12P48061 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CXCL12P48061 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CXCL12P48061 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CXCL12P48061 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CXCL12P48061 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CXCL12P48061 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CXCL12P48061 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.44■■□□□ 1.02
CXCL12P48061 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.44■■□□□ 1.02
CXCL12P48061 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.44■■□□□ 1.02
CXCL12P48061 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CXCL12P48061 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.44■■□□□ 1.02
CXCL12P48061 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.44■■□□□ 1.02
CXCL12P48061 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.44■■□□□ 1.02
CXCL12P48061 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CXCL12P48061 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CXCL12P48061 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CXCL12P48061 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CXCL12P48061 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CXCL12P48061 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.43■■□□□ 1.02
CXCL12P48061 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.43■■□□□ 1.02
CXCL12P48061 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
CXCL12P48061 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.43■■□□□ 1.02
CXCL12P48061 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.43■■□□□ 1.02
CXCL12P48061 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
CXCL12P48061 AP006587.3-201ENST00000525742 1516 ntBASIC21.43■■□□□ 1.02
CXCL12P48061 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
CXCL12P48061 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.43■■□□□ 1.02
CXCL12P48061 AC020928.2-201ENST00000588717 2197 ntBASIC21.43■■□□□ 1.02
CXCL12P48061 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CXCL12P48061 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CXCL12P48061 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
CXCL12P48061 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CXCL12P48061 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.42■■□□□ 1.02
CXCL12P48061 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.42■■□□□ 1.02
CXCL12P48061 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.42■■□□□ 1.02
CXCL12P48061 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.42■■□□□ 1.02
CXCL12P48061 AL162412.1-201ENST00000567129 965 ntBASIC21.42■■□□□ 1.02
CXCL12P48061 AC010980.2-201ENST00000587099 1412 ntBASIC21.42■■□□□ 1.02
CXCL12P48061 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CXCL12P48061 AL591742.1-201ENST00000604433 565 ntBASIC21.42■■□□□ 1.02
CXCL12P48061 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.42■■□□□ 1.02
CXCL12P48061 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.42■■□□□ 1.02
CXCL12P48061 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CXCL12P48061 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CXCL12P48061 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.41■■□□□ 1.02
CXCL12P48061 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CXCL12P48061 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.41■■□□□ 1.02
CXCL12P48061 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CXCL12P48061 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CXCL12P48061 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CXCL12P48061 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CXCL12P48061 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.41■■□□□ 1.02
CXCL12P48061 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CXCL12P48061 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
CXCL12P48061 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CXCL12P48061 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
CXCL12P48061 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
CXCL12P48061 POU5F1P4-201ENST00000413175 1085 ntBASIC21.41■■□□□ 1.02
CXCL12P48061 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CXCL12P48061 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.41■■□□□ 1.02
CXCL12P48061 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.41■■□□□ 1.02
CXCL12P48061 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
CXCL12P48061 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CXCL12P48061 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CXCL12P48061 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
CXCL12P48061 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CXCL12P48061 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CXCL12P48061 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CXCL12P48061 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CXCL12P48061 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.4■■□□□ 1.02
CXCL12P48061 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CXCL12P48061 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CXCL12P48061 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC21.4■■□□□ 1.02
CXCL12P48061 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.4■■□□□ 1.02
CXCL12P48061 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CXCL12P48061 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC21.4■■□□□ 1.02
CXCL12P48061 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CXCL12P48061 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CXCL12P48061 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
CXCL12P48061 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CXCL12P48061 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
CXCL12P48061 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.39■■□□□ 1.02
CXCL12P48061 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.02
CXCL12P48061 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CXCL12P48061 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CXCL12P48061 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC21.39■■□□□ 1.01
CXCL12P48061 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
CXCL12P48061 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CXCL12P48061 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms