Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.64■■□□□ 1.05
MSH2P43246 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
MSH2P43246 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH2P43246 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
MSH2P43246 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
MSH2P43246 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH2P43246 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
MSH2P43246 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.63■■□□□ 1.05
MSH2P43246 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.63■■□□□ 1.05
MSH2P43246 AL117332.1-201ENST00000622628 974 ntBASIC21.63■■□□□ 1.05
MSH2P43246 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH2P43246 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH2P43246 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.63■■□□□ 1.05
MSH2P43246 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
MSH2P43246 OR7E47P-201ENST00000546390 1422 ntBASIC21.63■■□□□ 1.05
MSH2P43246 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
MSH2P43246 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH2P43246 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH2P43246 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
MSH2P43246 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
MSH2P43246 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.62■■□□□ 1.05
MSH2P43246 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.62■■□□□ 1.05
MSH2P43246 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSH2P43246 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH2P43246 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH2P43246 AC241377.3-202ENST00000626088 1088 ntBASIC21.62■■□□□ 1.05
MSH2P43246 AC241585.3-202ENST00000628937 1088 ntBASIC21.62■■□□□ 1.05
MSH2P43246 AC245100.8-202ENST00000629247 1058 ntBASIC21.62■■□□□ 1.05
MSH2P43246 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
MSH2P43246 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
MSH2P43246 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
MSH2P43246 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH2P43246 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH2P43246 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.61■■□□□ 1.05
MSH2P43246 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
MSH2P43246 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
MSH2P43246 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.61■■□□□ 1.05
MSH2P43246 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.61■■□□□ 1.05
MSH2P43246 UNC93B8-201ENST00000511903 705 ntBASIC21.61■■□□□ 1.05
MSH2P43246 AC133637.1-201ENST00000624115 1537 ntBASIC21.6■■□□□ 1.05
MSH2P43246 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH2P43246 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH2P43246 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH2P43246 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH2P43246 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
MSH2P43246 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH2P43246 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
MSH2P43246 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC21.6■■□□□ 1.05
MSH2P43246 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSH2P43246 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
MSH2P43246 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH2P43246 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH2P43246 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH2P43246 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
MSH2P43246 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH2P43246 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
MSH2P43246 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH2P43246 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH2P43246 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH2P43246 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
MSH2P43246 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.59■■□□□ 1.05
MSH2P43246 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
MSH2P43246 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH2P43246 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH2P43246 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH2P43246 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH2P43246 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH2P43246 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MSH2P43246 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.58■■□□□ 1.05
MSH2P43246 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.05
MSH2P43246 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.58■■□□□ 1.05
MSH2P43246 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC21.58■■□□□ 1.05
MSH2P43246 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
MSH2P43246 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.58■■□□□ 1.05
MSH2P43246 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.58■■□□□ 1.04
MSH2P43246 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.04
MSH2P43246 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.58■■□□□ 1.04
MSH2P43246 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
MSH2P43246 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.58■■□□□ 1.04
MSH2P43246 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH2P43246 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH2P43246 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
MSH2P43246 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH2P43246 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH2P43246 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.57■■□□□ 1.04
MSH2P43246 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.57■■□□□ 1.04
MSH2P43246 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.57■■□□□ 1.04
MSH2P43246 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH2P43246 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.57■■□□□ 1.04
MSH2P43246 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH2P43246 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
MSH2P43246 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
MSH2P43246 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.57■■□□□ 1.04
MSH2P43246 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.56■■□□□ 1.04
MSH2P43246 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH2P43246 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
MSH2P43246 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
MSH2P43246 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.56■■□□□ 1.04
MSH2P43246 GUSBP5-201ENST00000418136 578 ntBASIC21.56■■□□□ 1.04
MSH2P43246 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms