Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 YLR154C-HYLR154C-H 132 nt2.57□□□□□ -2
CUP9P41817 YLR156C-AYLR156C-A 132 nt2.57□□□□□ -2
CUP9P41817 YLR157C-CYLR157C-C 132 nt2.57□□□□□ -2
CUP9P41817 YLR159C-AYLR159C-A 132 nt2.57□□□□□ -2
CUP9P41817 EMG1YLR186W 759 nt2.57□□□□□ -2
CUP9P41817 SFH1YLR321C 1281 nt2.57□□□□□ -2
CUP9P41817 RPL13BYMR142C 600 nt2.57□□□□□ -2
CUP9P41817 RPL20BYOR312C 519 nt2.57□□□□□ -2
CUP9P41817 SRO9YCL037C 1305 nt2.57□□□□□ -2
CUP9P41817 TEC1YBR083W 1461 nt2.57□□□□□ -2
CUP9P41817 TOP1YOL006C 2310 nt2.57□□□□□ -2
CUP9P41817 MIF2YKL089W 1650 nt2.57□□□□□ -2
CUP9P41817 YAT2YER024W 2772 nt2.56□□□□□ -2
CUP9P41817 TIF4631YGR162W 2859 nt2.56□□□□□ -2
CUP9P41817 BUB1YGR188C 3066 nt2.56□□□□□ -2
CUP9P41817 TSC11YER093C 4293 nt2.56□□□□□ -2
CUP9P41817 GRX6YDL010W 696 nt2.56□□□□□ -2
CUP9P41817 DYN2YDR424C 279 nt2.56□□□□□ -2
CUP9P41817 TDA8YAL064C-A 381 nt2.56□□□□□ -2
CUP9P41817 ERP1YAR002C-A 660 nt2.56□□□□□ -2
CUP9P41817 SED5YLR026C 1023 nt2.56□□□□□ -2
CUP9P41817 BUR2YLR226W 1188 nt2.56□□□□□ -2
CUP9P41817 YLR297WYLR297W 390 nt2.56□□□□□ -2
CUP9P41817 RPL33AYPL143W 324 nt2.56□□□□□ -2
CUP9P41817 PMR1YGL167C 2853 nt2.56□□□□□ -2
CUP9P41817 BCS1YDR375C 1371 nt2.55□□□□□ -2
CUP9P41817 YDR442WYDR442W 393 nt2.55□□□□□ -2
CUP9P41817 LIF1YGL090W 1266 nt2.55□□□□□ -2
CUP9P41817 DRS2YAL026C 4068 nt2.55□□□□□ -2
CUP9P41817 YUH1YJR099W 711 nt2.55□□□□□ -2
CUP9P41817 MET5YJR137C 4329 nt2.55□□□□□ -2
CUP9P41817 OAF3YKR064W 2592 nt2.55□□□□□ -2
CUP9P41817 EMP70YLR083C 2004 nt2.55□□□□□ -2
CUP9P41817 YML037CYML037C 1023 nt2.55□□□□□ -2
CUP9P41817 CUS1YMR240C 1311 nt2.55□□□□□ -2
CUP9P41817 STP1YDR463W 1560 nt2.54□□□□□ -2
CUP9P41817 PEF1YGR058W 1008 nt2.54□□□□□ -2
CUP9P41817 CSM2YIL132C 642 nt2.54□□□□□ -2
CUP9P41817 PET130YJL023C 1044 nt2.54□□□□□ -2
CUP9P41817 SPC3YLR066W 555 nt2.54□□□□□ -2
CUP9P41817 SEC14YMR079W 915 nt2.54□□□□□ -2
CUP9P41817 YBR242WYBR242W 717 nt2.54□□□□□ -2
CUP9P41817 ITC1YGL133W 3795 nt2.54□□□□□ -2
CUP9P41817 NFI1YOR156C 2181 nt2.54□□□□□ -2
CUP9P41817 XRN1YGL173C 4587 nt2.54□□□□□ -2
CUP9P41817 YBL005W-BYBL005W-B 5268 nt2.54□□□□□ -2
CUP9P41817 CDH1YGL003C 1701 nt2.54□□□□□ -2
CUP9P41817 UBP14YBR058C 2346 nt2.53□□□□□ -2
CUP9P41817 YVC1YOR087W 2028 nt2.53□□□□□ -2
CUP9P41817 PDS1YDR113C 1122 nt2.53□□□□□ -2
CUP9P41817 MMS2YGL087C 414 nt2.53□□□□□ -2
CUP9P41817 ARD1YHR013C 717 nt2.53□□□□□ -2
CUP9P41817 YIL025CYIL025C 375 nt2.53□□□□□ -2
CUP9P41817 RPS21BYJL136C 264 nt2.53□□□□□ -2
CUP9P41817 RPN13YLR421C 471 nt2.53□□□□□ -2
CUP9P41817 MPD1YOR288C 957 nt2.53□□□□□ -2
CUP9P41817 YPL107WYPL107W 747 nt2.53□□□□□ -2
CUP9P41817 COA2YPL189C-A 207 nt2.53□□□□□ -2
CUP9P41817 YPL276WYPL276W 438 nt2.53□□□□□ -2
CUP9P41817 YHR078WYHR078W 1659 nt2.53□□□□□ -2
CUP9P41817 DNA2YHR164C 4569 nt2.52□□□□□ -2.01
CUP9P41817 CUE3YGL110C 1875 nt2.52□□□□□ -2.01
CUP9P41817 HER2YMR293C 1395 nt2.52□□□□□ -2.01
CUP9P41817 BUR6YER159C 429 nt2.52□□□□□ -2.01
CUP9P41817 YBL077WYBL077W 432 nt2.52□□□□□ -2.01
CUP9P41817 DDI3YNL335W 678 nt2.52□□□□□ -2.01
CUP9P41817 AIM39YOL053W 1188 nt2.52□□□□□ -2.01
CUP9P41817 DGA1YOR245C 1257 nt2.52□□□□□ -2.01
CUP9P41817 TAF14YPL129W 735 nt2.52□□□□□ -2.01
CUP9P41817 YBR300CYBR300C 498 nt2.52□□□□□ -2.01
CUP9P41817 ERG11YHR007C 1593 nt2.52□□□□□ -2.01
CUP9P41817 TOM1YDR457W 9807 nt2.51□□□□□ -2.01
CUP9P41817 CCM1YGR150C 2595 nt2.51□□□□□ -2.01
CUP9P41817 YCR007CYCR007C 720 nt2.51□□□□□ -2.01
CUP9P41817 RPS29BYDL061C 171 nt2.51□□□□□ -2.01
CUP9P41817 BUD30YDL151C 582 nt2.51□□□□□ -2.01
CUP9P41817 YGR121W-AYGR121W-A 216 nt2.51□□□□□ -2.01
CUP9P41817 YKR075CYKR075C 924 nt2.51□□□□□ -2.01
CUP9P41817 CDA2YLR308W 939 nt2.51□□□□□ -2.01
CUP9P41817 YMR147WYMR147W 672 nt2.51□□□□□ -2.01
CUP9P41817 USV1YPL230W 1176 nt2.51□□□□□ -2.01
CUP9P41817 HBT1YDL223C 3141 nt2.51□□□□□ -2.01
CUP9P41817 CCT7YJL111W 1653 nt2.5□□□□□ -2.01
CUP9P41817 NMA111YNL123W 2994 nt2.5□□□□□ -2.01
CUP9P41817 TRE2YOR256C 2430 nt2.5□□□□□ -2.01
CUP9P41817 NDT80YHR124W 1884 nt2.5□□□□□ -2.01
CUP9P41817 YDR491CYDR491C 492 nt2.5□□□□□ -2.01
CUP9P41817 ATG27YJL178C 816 nt2.5□□□□□ -2.01
CUP9P41817 YJR020WYJR020W 333 nt2.5□□□□□ -2.01
CUP9P41817 YKL071WYKL071W 771 nt2.5□□□□□ -2.01
CUP9P41817 YKR033CYKR033C 426 nt2.5□□□□□ -2.01
CUP9P41817 COQ9YLR201C 783 nt2.5□□□□□ -2.01
CUP9P41817 YLR339CYLR339C 552 nt2.5□□□□□ -2.01
CUP9P41817 BUD21YOR078W 645 nt2.5□□□□□ -2.01
CUP9P41817 TCB2YNL087W 3537 nt2.5□□□□□ -2.01
CUP9P41817 CYR1YJL005W 6081 nt2.5□□□□□ -2.01
CUP9P41817 CEP3YMR168C 1827 nt2.49□□□□□ -2.01
CUP9P41817 ATG13YPR185W 2217 nt2.49□□□□□ -2.01
CUP9P41817 BEM4YPL161C 1902 nt2.49□□□□□ -2.01
CUP9P41817 YHR214C-DYHR214C-D 294 nt2.49□□□□□ -2.01
Retrieved 100 of 7,029 protein–RNA pairs in 22.3 ms