Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.67■□□□□ 0.9
HNF4AP41235 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC20.67■□□□□ 0.9
HNF4AP41235 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HNF4AP41235 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.67■□□□□ 0.9
HNF4AP41235 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.67■□□□□ 0.9
HNF4AP41235 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HNF4AP41235 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.67■□□□□ 0.9
HNF4AP41235 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HNF4AP41235 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HNF4AP41235 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.67■□□□□ 0.9
HNF4AP41235 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HNF4AP41235 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HNF4AP41235 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
HNF4AP41235 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HNF4AP41235 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HNF4AP41235 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
HNF4AP41235 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
HNF4AP41235 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.66■□□□□ 0.9
HNF4AP41235 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HNF4AP41235 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.66■□□□□ 0.9
HNF4AP41235 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.66■□□□□ 0.9
HNF4AP41235 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.66■□□□□ 0.9
HNF4AP41235 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.66■□□□□ 0.9
HNF4AP41235 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HNF4AP41235 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HNF4AP41235 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HNF4AP41235 AL024507.2-201ENST00000606070 2574 ntBASIC20.65■□□□□ 0.9
HNF4AP41235 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HNF4AP41235 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HNF4AP41235 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HNF4AP41235 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HNF4AP41235 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.65■□□□□ 0.9
HNF4AP41235 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HNF4AP41235 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HNF4AP41235 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.65■□□□□ 0.9
HNF4AP41235 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HNF4AP41235 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HNF4AP41235 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HNF4AP41235 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HNF4AP41235 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HNF4AP41235 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.65■□□□□ 0.9
HNF4AP41235 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.64■□□□□ 0.9
HNF4AP41235 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HNF4AP41235 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
HNF4AP41235 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.64■□□□□ 0.9
HNF4AP41235 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
HNF4AP41235 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.64■□□□□ 0.89
HNF4AP41235 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HNF4AP41235 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HNF4AP41235 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
HNF4AP41235 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HNF4AP41235 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HNF4AP41235 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.64■□□□□ 0.89
HNF4AP41235 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HNF4AP41235 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.64■□□□□ 0.89
HNF4AP41235 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.64■□□□□ 0.89
HNF4AP41235 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.64■□□□□ 0.89
HNF4AP41235 AC104564.3-201ENST00000582367 638 ntBASIC20.64■□□□□ 0.89
HNF4AP41235 SMUG1P1-201ENST00000590640 811 ntBASIC20.64■□□□□ 0.89
HNF4AP41235 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HNF4AP41235 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
HNF4AP41235 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
HNF4AP41235 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HNF4AP41235 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HNF4AP41235 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.63■□□□□ 0.89
HNF4AP41235 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.63■□□□□ 0.89
HNF4AP41235 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HNF4AP41235 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
HNF4AP41235 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HNF4AP41235 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HNF4AP41235 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.63■□□□□ 0.89
HNF4AP41235 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.63■□□□□ 0.89
HNF4AP41235 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.63■□□□□ 0.89
HNF4AP41235 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.63■□□□□ 0.89
HNF4AP41235 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HNF4AP41235 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HNF4AP41235 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HNF4AP41235 AC026471.6-201ENST00000622954 1905 ntBASIC20.63■□□□□ 0.89
HNF4AP41235 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HNF4AP41235 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
HNF4AP41235 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.62■□□□□ 0.89
HNF4AP41235 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HNF4AP41235 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.62■□□□□ 0.89
HNF4AP41235 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HNF4AP41235 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HNF4AP41235 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
HNF4AP41235 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
HNF4AP41235 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HNF4AP41235 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.62■□□□□ 0.89
HNF4AP41235 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
HNF4AP41235 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.61■□□□□ 0.89
HNF4AP41235 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
HNF4AP41235 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.61■□□□□ 0.89
HNF4AP41235 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.61■□□□□ 0.89
HNF4AP41235 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.61■□□□□ 0.89
HNF4AP41235 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HNF4AP41235 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HNF4AP41235 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HNF4AP41235 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HNF4AP41235 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms