Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
HADHAP40939 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HADHAP40939 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HADHAP40939 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.56■■□□□ 1.04
HADHAP40939 AL034346.1-201ENST00000568244 1277 ntBASIC21.56■■□□□ 1.04
HADHAP40939 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HADHAP40939 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HADHAP40939 AC026310.3-201ENST00000625186 2373 ntBASIC21.55■■□□□ 1.04
HADHAP40939 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HADHAP40939 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.55■■□□□ 1.04
HADHAP40939 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.55■■□□□ 1.04
HADHAP40939 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.55■■□□□ 1.04
HADHAP40939 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.55■■□□□ 1.04
HADHAP40939 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.55■■□□□ 1.04
HADHAP40939 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.55■■□□□ 1.04
HADHAP40939 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HADHAP40939 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HADHAP40939 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HADHAP40939 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HADHAP40939 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HADHAP40939 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HADHAP40939 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HADHAP40939 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
HADHAP40939 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.54■■□□□ 1.04
HADHAP40939 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HADHAP40939 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HADHAP40939 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.54■■□□□ 1.04
HADHAP40939 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.54■■□□□ 1.04
HADHAP40939 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.54■■□□□ 1.04
HADHAP40939 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HADHAP40939 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
HADHAP40939 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HADHAP40939 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.54■■□□□ 1.04
HADHAP40939 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HADHAP40939 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.54■■□□□ 1.04
HADHAP40939 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.54■■□□□ 1.04
HADHAP40939 TUB-203ENST00000534099 1759 ntTSL 2 BASIC21.53■■□□□ 1.04
HADHAP40939 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
HADHAP40939 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.53■■□□□ 1.04
HADHAP40939 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HADHAP40939 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.53■■□□□ 1.04
HADHAP40939 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.53■■□□□ 1.04
HADHAP40939 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HADHAP40939 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.53■■□□□ 1.04
HADHAP40939 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HADHAP40939 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HADHAP40939 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.53■■□□□ 1.04
HADHAP40939 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HADHAP40939 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.52■■□□□ 1.04
HADHAP40939 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HADHAP40939 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
HADHAP40939 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HADHAP40939 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HADHAP40939 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HADHAP40939 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
HADHAP40939 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HADHAP40939 MIR572-201ENST00000384983 95 ntBASIC21.52■■□□□ 1.04
HADHAP40939 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.52■■□□□ 1.04
HADHAP40939 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.52■■□□□ 1.04
HADHAP40939 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.52■■□□□ 1.04
HADHAP40939 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HADHAP40939 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.52■■□□□ 1.04
HADHAP40939 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
HADHAP40939 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
HADHAP40939 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
HADHAP40939 AL137060.1-201ENST00000618151 2648 ntBASIC21.51■■□□□ 1.03
HADHAP40939 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.51■■□□□ 1.03
HADHAP40939 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
HADHAP40939 MIR935-201ENST00000401179 91 ntBASIC21.51■■□□□ 1.03
HADHAP40939 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HADHAP40939 SMUG1P1-201ENST00000590640 811 ntBASIC21.51■■□□□ 1.03
HADHAP40939 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.51■■□□□ 1.03
HADHAP40939 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HADHAP40939 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HADHAP40939 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HADHAP40939 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC21.51■■□□□ 1.03
HADHAP40939 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.51■■□□□ 1.03
HADHAP40939 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HADHAP40939 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
HADHAP40939 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.5■■□□□ 1.03
HADHAP40939 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HADHAP40939 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.5■■□□□ 1.03
HADHAP40939 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HADHAP40939 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.5■■□□□ 1.03
HADHAP40939 AC105233.4-201ENST00000642045 216 ntBASIC21.5■■□□□ 1.03
HADHAP40939 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HADHAP40939 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.5■■□□□ 1.03
HADHAP40939 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
HADHAP40939 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.5■■□□□ 1.03
HADHAP40939 AP004607.7-201ENST00000527152 1677 ntBASIC21.5■■□□□ 1.03
HADHAP40939 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
HADHAP40939 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HADHAP40939 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HADHAP40939 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.49■■□□□ 1.03
HADHAP40939 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.49■■□□□ 1.03
HADHAP40939 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HADHAP40939 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.49■■□□□ 1.03
HADHAP40939 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HADHAP40939 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
HADHAP40939 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.49■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms