Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.31■■□□□ 1.16
HMGA1P17096 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGA1P17096 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC22.3■■□□□ 1.16
HMGA1P17096 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGA1P17096 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC22.3■■□□□ 1.16
HMGA1P17096 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
HMGA1P17096 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGA1P17096 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
HMGA1P17096 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC22.3■■□□□ 1.16
HMGA1P17096 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
HMGA1P17096 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGA1P17096 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC22.3■■□□□ 1.16
HMGA1P17096 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
HMGA1P17096 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC22.3■■□□□ 1.16
HMGA1P17096 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HMGA1P17096 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
HMGA1P17096 AC080038.3-201ENST00000623346 1952 ntBASIC22.29■■□□□ 1.16
HMGA1P17096 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC22.29■■□□□ 1.16
HMGA1P17096 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HMGA1P17096 CNN2P6-201ENST00000439038 900 ntBASIC22.29■■□□□ 1.16
HMGA1P17096 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC22.29■■□□□ 1.16
HMGA1P17096 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC22.29■■□□□ 1.16
HMGA1P17096 EMC9-206ENST00000560403 872 ntTSL 2 BASIC22.29■■□□□ 1.16
HMGA1P17096 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.29■■□□□ 1.16
HMGA1P17096 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC22.29■■□□□ 1.16
HMGA1P17096 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC22.29■■□□□ 1.16
HMGA1P17096 PARP1-210ENST00000629232 477 ntTSL 5 BASIC22.29■■□□□ 1.16
HMGA1P17096 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC22.29■■□□□ 1.16
HMGA1P17096 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
HMGA1P17096 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HMGA1P17096 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC22.29■■□□□ 1.16
HMGA1P17096 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGA1P17096 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGA1P17096 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGA1P17096 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC22.28■■□□□ 1.16
HMGA1P17096 AC007322.1-201ENST00000426983 750 ntBASIC22.28■■□□□ 1.16
HMGA1P17096 SLC7A5P2-201ENST00000553010 536 ntBASIC22.28■■□□□ 1.16
HMGA1P17096 SLC7A5P1-201ENST00000568957 537 ntBASIC22.28■■□□□ 1.16
HMGA1P17096 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC22.28■■□□□ 1.16
HMGA1P17096 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGA1P17096 WT1-AS_3.1-201ENST00000613262 234 ntBASIC22.28■■□□□ 1.16
HMGA1P17096 AL109923.1-201ENST00000618799 583 ntBASIC22.28■■□□□ 1.16
HMGA1P17096 AC010536.3-201ENST00000620306 533 ntBASIC22.28■■□□□ 1.16
HMGA1P17096 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
HMGA1P17096 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HMGA1P17096 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC22.28■■□□□ 1.16
HMGA1P17096 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGA1P17096 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HMGA1P17096 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGA1P17096 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGA1P17096 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGA1P17096 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HMGA1P17096 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGA1P17096 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC22.27■■□□□ 1.16
HMGA1P17096 AC127496.7-201ENST00000625110 1798 ntBASIC22.27■■□□□ 1.16
HMGA1P17096 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HMGA1P17096 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGA1P17096 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGA1P17096 UQCRFS1P1-201ENST00000435169 820 ntBASIC22.27■■□□□ 1.16
HMGA1P17096 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC22.27■■□□□ 1.16
HMGA1P17096 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC22.27■■□□□ 1.16
HMGA1P17096 RNF146-206ENST00000480444 843 ntTSL 2 BASIC22.27■■□□□ 1.16
HMGA1P17096 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC22.27■■□□□ 1.16
HMGA1P17096 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC22.27■■□□□ 1.16
HMGA1P17096 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
HMGA1P17096 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC22.27■■□□□ 1.16
HMGA1P17096 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
HMGA1P17096 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HMGA1P17096 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.15
HMGA1P17096 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGA1P17096 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGA1P17096 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC22.26■■□□□ 1.15
HMGA1P17096 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGA1P17096 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGA1P17096 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGA1P17096 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC22.26■■□□□ 1.15
HMGA1P17096 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HMGA1P17096 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC22.26■■□□□ 1.15
HMGA1P17096 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
HMGA1P17096 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HMGA1P17096 GPX1P1-201ENST00000388829 606 ntBASIC22.25■■□□□ 1.15
HMGA1P17096 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC22.25■■□□□ 1.15
HMGA1P17096 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC22.25■■□□□ 1.15
HMGA1P17096 AC005181.1-201ENST00000604782 1256 ntBASIC22.25■■□□□ 1.15
HMGA1P17096 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGA1P17096 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
HMGA1P17096 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGA1P17096 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGA1P17096 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
HMGA1P17096 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC22.24■■□□□ 1.15
HMGA1P17096 AC092053.2-201ENST00000640557 1818 ntBASIC22.24■■□□□ 1.15
HMGA1P17096 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.24■■□□□ 1.15
HMGA1P17096 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HMGA1P17096 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC22.24■■□□□ 1.15
HMGA1P17096 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC22.24■■□□□ 1.15
HMGA1P17096 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC22.24■■□□□ 1.15
HMGA1P17096 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC22.24■■□□□ 1.15
HMGA1P17096 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
HMGA1P17096 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.24■■□□□ 1.15
HMGA1P17096 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms