Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC25.22■■□□□ 1.63
HMGB1P09429 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
HMGB1P09429 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
HMGB1P09429 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
HMGB1P09429 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
HMGB1P09429 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC25.22■■□□□ 1.63
HMGB1P09429 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
HMGB1P09429 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC25.22■■□□□ 1.63
HMGB1P09429 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
HMGB1P09429 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
HMGB1P09429 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
HMGB1P09429 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
HMGB1P09429 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
HMGB1P09429 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
HMGB1P09429 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
HMGB1P09429 HYI-206ENST00000372434 1025 ntTSL 5 BASIC25.21■■□□□ 1.63
HMGB1P09429 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC25.21■■□□□ 1.63
HMGB1P09429 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
HMGB1P09429 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC25.21■■□□□ 1.63
HMGB1P09429 AL354811.1-201ENST00000610286 706 ntBASIC25.21■■□□□ 1.63
HMGB1P09429 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC25.21■■□□□ 1.63
HMGB1P09429 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC25.21■■□□□ 1.63
HMGB1P09429 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
HMGB1P09429 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC25.2■■□□□ 1.63
HMGB1P09429 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC25.2■■□□□ 1.63
HMGB1P09429 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC25.2■■□□□ 1.63
HMGB1P09429 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
HMGB1P09429 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC25.2■■□□□ 1.62
HMGB1P09429 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
HMGB1P09429 MFF-203ENST00000349901 1716 ntTSL 2 BASIC25.2■■□□□ 1.62
HMGB1P09429 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC25.2■■□□□ 1.62
HMGB1P09429 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
HMGB1P09429 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
HMGB1P09429 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
HMGB1P09429 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC25.2■■□□□ 1.62
HMGB1P09429 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
HMGB1P09429 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC25.2■■□□□ 1.62
HMGB1P09429 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
HMGB1P09429 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC25.19■■□□□ 1.62
HMGB1P09429 AL358852.1-201ENST00000623174 1268 ntBASIC25.19■■□□□ 1.62
HMGB1P09429 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC25.19■■□□□ 1.62
HMGB1P09429 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
HMGB1P09429 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC25.19■■□□□ 1.62
HMGB1P09429 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
HMGB1P09429 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
HMGB1P09429 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC25.19■■□□□ 1.62
HMGB1P09429 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
HMGB1P09429 AC055733.4-201ENST00000638462 1354 ntBASIC25.18■■□□□ 1.62
HMGB1P09429 PXK-203ENST00000383715 1756 ntTSL 5 BASIC25.18■■□□□ 1.62
HMGB1P09429 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC25.18■■□□□ 1.62
HMGB1P09429 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
HMGB1P09429 AC005224.4-201ENST00000583262 1652 ntBASIC25.18■■□□□ 1.62
HMGB1P09429 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
HMGB1P09429 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC25.18■■□□□ 1.62
HMGB1P09429 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
HMGB1P09429 RHOF-204ENST00000537265 699 ntTSL 2 BASIC25.18■■□□□ 1.62
HMGB1P09429 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC25.18■■□□□ 1.62
HMGB1P09429 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC25.18■■□□□ 1.62
HMGB1P09429 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
HMGB1P09429 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
HMGB1P09429 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
HMGB1P09429 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
HMGB1P09429 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
HMGB1P09429 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC25.17■■□□□ 1.62
HMGB1P09429 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
HMGB1P09429 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
HMGB1P09429 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC25.17■■□□□ 1.62
HMGB1P09429 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
HMGB1P09429 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC25.17■■□□□ 1.62
HMGB1P09429 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC25.17■■□□□ 1.62
HMGB1P09429 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC25.17■■□□□ 1.62
HMGB1P09429 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC25.17■■□□□ 1.62
HMGB1P09429 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC25.17■■□□□ 1.62
HMGB1P09429 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC25.17■■□□□ 1.62
HMGB1P09429 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
HMGB1P09429 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC25.17■■□□□ 1.62
HMGB1P09429 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
HMGB1P09429 Z98882.1-201ENST00000622160 2253 ntBASIC25.16■■□□□ 1.62
HMGB1P09429 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC25.16■■□□□ 1.62
HMGB1P09429 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
HMGB1P09429 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC25.16■■□□□ 1.62
HMGB1P09429 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
HMGB1P09429 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
HMGB1P09429 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
HMGB1P09429 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC25.15■■□□□ 1.62
HMGB1P09429 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
HMGB1P09429 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
HMGB1P09429 AC007375.3-201ENST00000600936 2314 ntBASIC25.15■■□□□ 1.62
HMGB1P09429 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HMGB1P09429 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HMGB1P09429 AC026310.3-201ENST00000625186 2373 ntBASIC25.15■■□□□ 1.62
HMGB1P09429 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC25.15■■□□□ 1.62
HMGB1P09429 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
HMGB1P09429 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC25.15■■□□□ 1.62
HMGB1P09429 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
HMGB1P09429 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC25.15■■□□□ 1.62
HMGB1P09429 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
HMGB1P09429 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC25.15■■□□□ 1.62
HMGB1P09429 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
HMGB1P09429 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms