Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC20.95■□□□□ 0.94
HOXC4P09017 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC4P09017 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC4P09017 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC4P09017 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC4P09017 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.95■□□□□ 0.94
HOXC4P09017 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC4P09017 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC4P09017 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC4P09017 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.94■□□□□ 0.94
HOXC4P09017 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC20.94■□□□□ 0.94
HOXC4P09017 DUX4L16-201ENST00000555130 1264 ntBASIC20.94■□□□□ 0.94
HOXC4P09017 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.94■□□□□ 0.94
HOXC4P09017 AC231657.2-201ENST00000624556 255 ntBASIC20.94■□□□□ 0.94
HOXC4P09017 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC4P09017 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.93■□□□□ 0.94
HOXC4P09017 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC4P09017 ID1-201ENST00000376105 1233 ntBASIC20.93■□□□□ 0.94
HOXC4P09017 POU5F1P4-201ENST00000413175 1085 ntBASIC20.93■□□□□ 0.94
HOXC4P09017 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.93■□□□□ 0.94
HOXC4P09017 AC008175.2-201ENST00000612840 297 ntBASIC20.93■□□□□ 0.94
HOXC4P09017 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
HOXC4P09017 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.93■□□□□ 0.94
HOXC4P09017 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.93■□□□□ 0.94
HOXC4P09017 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC4P09017 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
HOXC4P09017 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
HOXC4P09017 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.92■□□□□ 0.94
HOXC4P09017 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.92■□□□□ 0.94
HOXC4P09017 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC4P09017 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.92■□□□□ 0.94
HOXC4P09017 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.92■□□□□ 0.94
HOXC4P09017 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.92■□□□□ 0.94
HOXC4P09017 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
HOXC4P09017 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
HOXC4P09017 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.92■□□□□ 0.94
HOXC4P09017 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC4P09017 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC4P09017 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC4P09017 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
HOXC4P09017 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC4P09017 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.92■□□□□ 0.94
HOXC4P09017 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC4P09017 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HOXC4P09017 C9orf163-202ENST00000624034 2573 ntBASIC20.92■□□□□ 0.94
HOXC4P09017 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC4P09017 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.91■□□□□ 0.94
HOXC4P09017 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC4P09017 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC4P09017 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC4P09017 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC4P09017 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC20.91■□□□□ 0.94
HOXC4P09017 BRI3-207ENST00000539286 699 ntTSL 2 BASIC20.91■□□□□ 0.94
HOXC4P09017 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.91■□□□□ 0.94
HOXC4P09017 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC4P09017 AC003102.1-202ENST00000563394 1796 ntBASIC20.91■□□□□ 0.94
HOXC4P09017 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC20.91■□□□□ 0.94
HOXC4P09017 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
HOXC4P09017 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HOXC4P09017 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.91■□□□□ 0.94
HOXC4P09017 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
HOXC4P09017 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.9■□□□□ 0.94
HOXC4P09017 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
HOXC4P09017 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.9■□□□□ 0.94
HOXC4P09017 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.9■□□□□ 0.94
HOXC4P09017 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXC4P09017 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXC4P09017 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
HOXC4P09017 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.9■□□□□ 0.94
HOXC4P09017 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC4P09017 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.9■□□□□ 0.94
HOXC4P09017 CROCCP5-201ENST00000436658 830 ntBASIC20.9■□□□□ 0.94
HOXC4P09017 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.9■□□□□ 0.94
HOXC4P09017 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
HOXC4P09017 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.9■□□□□ 0.94
HOXC4P09017 AC120498.10-201ENST00000621827 505 ntBASIC20.9■□□□□ 0.94
HOXC4P09017 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
HOXC4P09017 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC4P09017 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC4P09017 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.9■□□□□ 0.94
HOXC4P09017 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HOXC4P09017 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HOXC4P09017 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.89■□□□□ 0.94
HOXC4P09017 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
HOXC4P09017 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC4P09017 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.89■□□□□ 0.93
HOXC4P09017 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.89■□□□□ 0.93
HOXC4P09017 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC4P09017 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC4P09017 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
HOXC4P09017 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC4P09017 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.89■□□□□ 0.93
HOXC4P09017 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC4P09017 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC4P09017 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC4P09017 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
HOXC4P09017 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC4P09017 AC010536.3-201ENST00000620306 533 ntBASIC20.89■□□□□ 0.93
HOXC4P09017 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HOXC4P09017 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms