Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC9.67□□□□□ -0.86
USH2AO75445 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC9.67□□□□□ -0.86
USH2AO75445 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 GATS-209ENST00000454084 1030 ntTSL 3 BASIC9.67□□□□□ -0.86
USH2AO75445 AC069236.1-201ENST00000604339 616 ntBASIC9.67□□□□□ -0.86
USH2AO75445 SNX21-213ENST00000614929 587 ntTSL 5 BASIC9.67□□□□□ -0.86
USH2AO75445 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
USH2AO75445 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC9.67□□□□□ -0.86
USH2AO75445 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC9.67□□□□□ -0.86
USH2AO75445 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC9.67□□□□□ -0.86
USH2AO75445 KRT126P-201ENST00000549467 1181 ntBASIC9.67□□□□□ -0.86
USH2AO75445 MIR4785-201ENST00000585005 73 ntBASIC9.67□□□□□ -0.86
USH2AO75445 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC9.67□□□□□ -0.86
USH2AO75445 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
USH2AO75445 SOX15-203ENST00000570788 1093 ntBASIC9.67□□□□□ -0.86
USH2AO75445 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
USH2AO75445 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC9.66□□□□□ -0.86
USH2AO75445 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC9.66□□□□□ -0.86
USH2AO75445 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC9.66□□□□□ -0.86
USH2AO75445 TPM4P1-201ENST00000436100 807 ntBASIC9.66□□□□□ -0.86
USH2AO75445 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC9.66□□□□□ -0.86
USH2AO75445 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC9.66□□□□□ -0.86
USH2AO75445 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC9.66□□□□□ -0.86
USH2AO75445 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC9.66□□□□□ -0.86
USH2AO75445 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 AC233702.5-201ENST00000584107 538 ntBASIC9.66□□□□□ -0.86
USH2AO75445 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC9.66□□□□□ -0.86
USH2AO75445 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC9.66□□□□□ -0.86
USH2AO75445 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC9.66□□□□□ -0.86
USH2AO75445 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC9.66□□□□□ -0.86
USH2AO75445 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC9.66□□□□□ -0.86
USH2AO75445 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC9.66□□□□□ -0.86
USH2AO75445 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC9.66□□□□□ -0.86
USH2AO75445 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC9.66□□□□□ -0.86
USH2AO75445 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
USH2AO75445 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC9.65□□□□□ -0.86
USH2AO75445 AC004687.1-201ENST00000579003 1625 ntBASIC9.65□□□□□ -0.86
USH2AO75445 NME3-204ENST00000563498 920 ntTSL 2 BASIC9.65□□□□□ -0.86
USH2AO75445 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC9.65□□□□□ -0.86
USH2AO75445 PRKY-204ENST00000533551 1019 ntBASIC9.65□□□□□ -0.86
USH2AO75445 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC9.65□□□□□ -0.86
USH2AO75445 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC9.65□□□□□ -0.86
USH2AO75445 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC9.65□□□□□ -0.86
USH2AO75445 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC9.65□□□□□ -0.86
USH2AO75445 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC9.65□□□□□ -0.86
USH2AO75445 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
USH2AO75445 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.86
USH2AO75445 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC9.65□□□□□ -0.86
USH2AO75445 TSPY7P-201ENST00000431358 1114 ntBASIC9.65□□□□□ -0.86
USH2AO75445 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC9.65□□□□□ -0.86
USH2AO75445 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC9.65□□□□□ -0.86
USH2AO75445 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC9.65□□□□□ -0.86
USH2AO75445 RBM17P2-201ENST00000616397 1405 ntBASIC9.65□□□□□ -0.86
USH2AO75445 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
USH2AO75445 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
USH2AO75445 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.86
USH2AO75445 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC9.65□□□□□ -0.87
USH2AO75445 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC9.65□□□□□ -0.87
USH2AO75445 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC9.65□□□□□ -0.87
USH2AO75445 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC9.65□□□□□ -0.87
USH2AO75445 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC9.65□□□□□ -0.87
USH2AO75445 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC9.65□□□□□ -0.87
USH2AO75445 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC9.64□□□□□ -0.87
USH2AO75445 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
USH2AO75445 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC9.64□□□□□ -0.87
USH2AO75445 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC9.64□□□□□ -0.87
USH2AO75445 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
USH2AO75445 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
USH2AO75445 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
USH2AO75445 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC9.64□□□□□ -0.87
USH2AO75445 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC9.64□□□□□ -0.87
USH2AO75445 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC9.64□□□□□ -0.87
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms