Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS4BO75351 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS4BO75351 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
VPS4BO75351 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 AL024507.2-201ENST00000606070 2574 ntBASIC20.85■□□□□ 0.93
VPS4BO75351 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
VPS4BO75351 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.85■□□□□ 0.93
VPS4BO75351 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
VPS4BO75351 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4BO75351 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.84■□□□□ 0.93
VPS4BO75351 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4BO75351 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4BO75351 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
VPS4BO75351 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS4BO75351 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4BO75351 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4BO75351 AC099791.1-201ENST00000416440 715 ntBASIC20.84■□□□□ 0.93
VPS4BO75351 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS4BO75351 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.84■□□□□ 0.93
VPS4BO75351 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4BO75351 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4BO75351 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.84■□□□□ 0.93
VPS4BO75351 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4BO75351 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4BO75351 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4BO75351 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
VPS4BO75351 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VPS4BO75351 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS4BO75351 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS4BO75351 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.83■□□□□ 0.93
VPS4BO75351 Z98882.1-201ENST00000622160 2253 ntBASIC20.83■□□□□ 0.93
VPS4BO75351 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
VPS4BO75351 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VPS4BO75351 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS4BO75351 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.83■□□□□ 0.93
VPS4BO75351 AL138724.1-201ENST00000606771 1088 ntBASIC20.83■□□□□ 0.93
VPS4BO75351 AC011298.3-201ENST00000615796 283 ntBASIC20.83■□□□□ 0.93
VPS4BO75351 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VPS4BO75351 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.92
VPS4BO75351 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS4BO75351 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VPS4BO75351 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.83■□□□□ 0.92
VPS4BO75351 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS4BO75351 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS4BO75351 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS4BO75351 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VPS4BO75351 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VPS4BO75351 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4BO75351 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4BO75351 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS4BO75351 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4BO75351 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS4BO75351 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS4BO75351 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4BO75351 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4BO75351 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4BO75351 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4BO75351 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4BO75351 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS4BO75351 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4BO75351 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.82■□□□□ 0.92
VPS4BO75351 AC034268.1-201ENST00000441047 882 ntBASIC20.82■□□□□ 0.92
VPS4BO75351 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS4BO75351 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VPS4BO75351 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.82■□□□□ 0.92
VPS4BO75351 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.82■□□□□ 0.92
VPS4BO75351 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.82■□□□□ 0.92
VPS4BO75351 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS4BO75351 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4BO75351 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4BO75351 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4BO75351 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS4BO75351 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS4BO75351 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4BO75351 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.81■□□□□ 0.92
VPS4BO75351 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4BO75351 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4BO75351 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4BO75351 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4BO75351 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
VPS4BO75351 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS4BO75351 AC005229.4-201ENST00000610085 2198 ntBASIC20.8■□□□□ 0.92
VPS4BO75351 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS4BO75351 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS4BO75351 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
VPS4BO75351 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.8■□□□□ 0.92
VPS4BO75351 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS4BO75351 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS4BO75351 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.8■□□□□ 0.92
VPS4BO75351 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.8■□□□□ 0.92
VPS4BO75351 AC099791.2-201ENST00000605725 427 ntBASIC20.8■□□□□ 0.92
VPS4BO75351 AC068587.7-201ENST00000641602 218 ntBASIC20.8■□□□□ 0.92
VPS4BO75351 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VPS4BO75351 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms