Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.22■□□□□ 0.67
SSX4O60224 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SSX4O60224 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SSX4O60224 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX4O60224 RASA4CP-201ENST00000424092 1398 ntBASIC19.21■□□□□ 0.67
SSX4O60224 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SSX4O60224 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
SSX4O60224 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX4O60224 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SSX4O60224 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX4O60224 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX4O60224 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX4O60224 AC027682.1-201ENST00000562846 899 ntBASIC19.21■□□□□ 0.67
SSX4O60224 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.21■□□□□ 0.67
SSX4O60224 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.21■□□□□ 0.67
SSX4O60224 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX4O60224 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX4O60224 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SSX4O60224 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX4O60224 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.2■□□□□ 0.66
SSX4O60224 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX4O60224 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX4O60224 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.2■□□□□ 0.66
SSX4O60224 AL138724.1-201ENST00000606771 1088 ntBASIC19.2■□□□□ 0.66
SSX4O60224 AC011298.3-201ENST00000615796 283 ntBASIC19.2■□□□□ 0.66
SSX4O60224 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX4O60224 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX4O60224 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX4O60224 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SSX4O60224 AF106564.1-201ENST00000607058 2553 ntBASIC19.2■□□□□ 0.66
SSX4O60224 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.2■□□□□ 0.66
SSX4O60224 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
SSX4O60224 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX4O60224 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SSX4O60224 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SSX4O60224 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.19■□□□□ 0.66
SSX4O60224 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX4O60224 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX4O60224 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.19■□□□□ 0.66
SSX4O60224 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.19■□□□□ 0.66
SSX4O60224 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX4O60224 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.19■□□□□ 0.66
SSX4O60224 AC104564.3-201ENST00000582367 638 ntBASIC19.19■□□□□ 0.66
SSX4O60224 AC241377.3-202ENST00000626088 1088 ntBASIC19.19■□□□□ 0.66
SSX4O60224 AC241585.3-202ENST00000628937 1088 ntBASIC19.19■□□□□ 0.66
SSX4O60224 AC245100.8-202ENST00000629247 1058 ntBASIC19.19■□□□□ 0.66
SSX4O60224 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
SSX4O60224 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX4O60224 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SSX4O60224 C17orf82-201ENST00000623772 1530 ntBASIC19.19■□□□□ 0.66
SSX4O60224 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SSX4O60224 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.19■□□□□ 0.66
SSX4O60224 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSX4O60224 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.18■□□□□ 0.66
SSX4O60224 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SSX4O60224 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.18■□□□□ 0.66
SSX4O60224 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSX4O60224 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.18■□□□□ 0.66
SSX4O60224 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.18■□□□□ 0.66
SSX4O60224 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSX4O60224 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSX4O60224 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SSX4O60224 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SSX4O60224 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SSX4O60224 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SSX4O60224 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
SSX4O60224 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.18■□□□□ 0.66
SSX4O60224 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SSX4O60224 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.17■□□□□ 0.66
SSX4O60224 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSX4O60224 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
SSX4O60224 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
SSX4O60224 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSX4O60224 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSX4O60224 AC099791.1-201ENST00000416440 715 ntBASIC19.17■□□□□ 0.66
SSX4O60224 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SSX4O60224 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSX4O60224 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.17■□□□□ 0.66
SSX4O60224 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SSX4O60224 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSX4O60224 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SSX4O60224 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SSX4O60224 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SSX4O60224 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSX4O60224 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.16■□□□□ 0.66
SSX4O60224 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.16■□□□□ 0.66
SSX4O60224 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSX4O60224 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.16■□□□□ 0.66
SSX4O60224 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSX4O60224 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SSX4O60224 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
SSX4O60224 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSX4O60224 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SSX4O60224 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.16■□□□□ 0.66
SSX4O60224 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SSX4O60224 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSX4O60224 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.16■□□□□ 0.66
SSX4O60224 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SSX4O60224 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SSX4O60224 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms