Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.44■□□□□ 0.7
COL6A6A6NMZ7 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A6A6NMZ7 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A6A6NMZ7 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A6A6NMZ7 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A6A6NMZ7 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
COL6A6A6NMZ7 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
COL6A6A6NMZ7 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.43■□□□□ 0.7
COL6A6A6NMZ7 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A6A6NMZ7 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A6A6NMZ7 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A6A6NMZ7 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A6A6NMZ7 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.43■□□□□ 0.7
COL6A6A6NMZ7 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.43■□□□□ 0.7
COL6A6A6NMZ7 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL6A6A6NMZ7 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A6A6NMZ7 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.42■□□□□ 0.7
COL6A6A6NMZ7 DUSP8P5-201ENST00000422884 1815 ntBASIC19.42■□□□□ 0.7
COL6A6A6NMZ7 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A6A6NMZ7 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A6A6NMZ7 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A6A6NMZ7 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
COL6A6A6NMZ7 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A6A6NMZ7 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A6A6NMZ7 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.42■□□□□ 0.7
COL6A6A6NMZ7 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.42■□□□□ 0.7
COL6A6A6NMZ7 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A6A6NMZ7 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A6A6NMZ7 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL6A6A6NMZ7 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
COL6A6A6NMZ7 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.41■□□□□ 0.7
COL6A6A6NMZ7 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.41■□□□□ 0.7
COL6A6A6NMZ7 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A6A6NMZ7 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A6A6NMZ7 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A6A6NMZ7 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.41■□□□□ 0.7
COL6A6A6NMZ7 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.41■□□□□ 0.7
COL6A6A6NMZ7 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.41■□□□□ 0.7
COL6A6A6NMZ7 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
COL6A6A6NMZ7 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 RN7SL850P-201ENST00000579959 291 ntBASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 AC012306.2-201ENST00000609350 630 ntBASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 LINC00543-201ENST00000567234 1845 ntBASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
COL6A6A6NMZ7 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
COL6A6A6NMZ7 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A6A6NMZ7 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A6A6NMZ7 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC19.39■□□□□ 0.69
COL6A6A6NMZ7 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.39■□□□□ 0.69
COL6A6A6NMZ7 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.39■□□□□ 0.69
COL6A6A6NMZ7 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A6A6NMZ7 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A6A6NMZ7 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A6A6NMZ7 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.39■□□□□ 0.69
COL6A6A6NMZ7 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A6A6NMZ7 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A6A6NMZ7 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
COL6A6A6NMZ7 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC19.38■□□□□ 0.69
COL6A6A6NMZ7 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
COL6A6A6NMZ7 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms