Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.31■□□□□ 0.68
HIF3AQ9Y2N7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HIF3AQ9Y2N7 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HIF3AQ9Y2N7 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
HIF3AQ9Y2N7 AL137060.1-201ENST00000618151 2648 ntBASIC19.31■□□□□ 0.68
HIF3AQ9Y2N7 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HIF3AQ9Y2N7 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HIF3AQ9Y2N7 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HIF3AQ9Y2N7 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HIF3AQ9Y2N7 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
HIF3AQ9Y2N7 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HIF3AQ9Y2N7 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HIF3AQ9Y2N7 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HIF3AQ9Y2N7 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HIF3AQ9Y2N7 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HIF3AQ9Y2N7 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 UNC93B3-201ENST00000308076 687 ntBASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 BX842568.3-201ENST00000418104 571 ntBASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 AC104564.3-201ENST00000582367 638 ntBASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 Z98882.1-201ENST00000622160 2253 ntBASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
HIF3AQ9Y2N7 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIF3AQ9Y2N7 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIF3AQ9Y2N7 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIF3AQ9Y2N7 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.27■□□□□ 0.68
HIF3AQ9Y2N7 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIF3AQ9Y2N7 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
HIF3AQ9Y2N7 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.27■□□□□ 0.68
HIF3AQ9Y2N7 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.27■□□□□ 0.68
HIF3AQ9Y2N7 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HIF3AQ9Y2N7 MIR4767-201ENST00000582827 78 ntBASIC19.27■□□□□ 0.68
HIF3AQ9Y2N7 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.27■□□□□ 0.68
HIF3AQ9Y2N7 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIF3AQ9Y2N7 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIF3AQ9Y2N7 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HIF3AQ9Y2N7 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HIF3AQ9Y2N7 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HIF3AQ9Y2N7 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HIF3AQ9Y2N7 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 AC131212.1-201ENST00000613771 668 ntBASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HIF3AQ9Y2N7 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.25■□□□□ 0.67
HIF3AQ9Y2N7 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HIF3AQ9Y2N7 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.25■□□□□ 0.67
HIF3AQ9Y2N7 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.25■□□□□ 0.67
HIF3AQ9Y2N7 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HIF3AQ9Y2N7 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms