Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 RPS2P52-201ENST00000469610 820 ntBASIC23.56■■□□□ 1.36
HIPK3Q9H422 RARRES2P4-201ENST00000514074 484 ntBASIC23.56■■□□□ 1.36
HIPK3Q9H422 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HIPK3Q9H422 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC23.56■■□□□ 1.36
HIPK3Q9H422 AC016405.3-201ENST00000607710 860 ntBASIC23.56■■□□□ 1.36
HIPK3Q9H422 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC23.56■■□□□ 1.36
HIPK3Q9H422 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HIPK3Q9H422 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.56■■□□□ 1.36
HIPK3Q9H422 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
HIPK3Q9H422 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HIPK3Q9H422 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HIPK3Q9H422 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HIPK3Q9H422 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.55■■□□□ 1.36
HIPK3Q9H422 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HIPK3Q9H422 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
HIPK3Q9H422 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
HIPK3Q9H422 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC23.55■■□□□ 1.36
HIPK3Q9H422 ARL16-209ENST00000573715 763 ntTSL 3 BASIC23.55■■□□□ 1.36
HIPK3Q9H422 ARL16-211ENST00000576135 694 ntTSL 3 BASIC23.55■■□□□ 1.36
HIPK3Q9H422 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.55■■□□□ 1.36
HIPK3Q9H422 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC23.55■■□□□ 1.36
HIPK3Q9H422 AC069236.1-201ENST00000604339 616 ntBASIC23.55■■□□□ 1.36
HIPK3Q9H422 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HIPK3Q9H422 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
HIPK3Q9H422 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
HIPK3Q9H422 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
HIPK3Q9H422 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.54■■□□□ 1.36
HIPK3Q9H422 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
HIPK3Q9H422 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.54■■□□□ 1.36
HIPK3Q9H422 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC23.54■■□□□ 1.36
HIPK3Q9H422 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC23.54■■□□□ 1.36
HIPK3Q9H422 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.54■■□□□ 1.36
HIPK3Q9H422 EEF1DP3-203ENST00000566025 782 ntBASIC23.54■■□□□ 1.36
HIPK3Q9H422 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.54■■□□□ 1.36
HIPK3Q9H422 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
HIPK3Q9H422 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
HIPK3Q9H422 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC23.54■■□□□ 1.36
HIPK3Q9H422 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC23.54■■□□□ 1.36
HIPK3Q9H422 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
HIPK3Q9H422 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC23.54■■□□□ 1.36
HIPK3Q9H422 LINC01960-201ENST00000563759 1884 ntBASIC23.53■■□□□ 1.36
HIPK3Q9H422 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
HIPK3Q9H422 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
HIPK3Q9H422 AL512625.2-201ENST00000417533 625 ntBASIC23.53■■□□□ 1.36
HIPK3Q9H422 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
HIPK3Q9H422 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC23.53■■□□□ 1.36
HIPK3Q9H422 AC098590.1-201ENST00000468126 897 ntBASIC23.53■■□□□ 1.36
HIPK3Q9H422 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.53■■□□□ 1.36
HIPK3Q9H422 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC23.53■■□□□ 1.36
HIPK3Q9H422 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
HIPK3Q9H422 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
HIPK3Q9H422 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HIPK3Q9H422 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC23.52■■□□□ 1.36
HIPK3Q9H422 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HIPK3Q9H422 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HIPK3Q9H422 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HIPK3Q9H422 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
HIPK3Q9H422 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HIPK3Q9H422 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.52■■□□□ 1.36
HIPK3Q9H422 BX276092.2-201ENST00000417668 665 ntBASIC23.52■■□□□ 1.36
HIPK3Q9H422 DUSP5P2-201ENST00000426873 1033 ntBASIC23.52■■□□□ 1.36
HIPK3Q9H422 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC23.52■■□□□ 1.36
HIPK3Q9H422 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.52■■□□□ 1.36
HIPK3Q9H422 AC053503.5-201ENST00000601508 636 ntBASIC23.52■■□□□ 1.36
HIPK3Q9H422 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HIPK3Q9H422 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HIPK3Q9H422 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
HIPK3Q9H422 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
HIPK3Q9H422 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.51■■□□□ 1.35
HIPK3Q9H422 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC23.51■■□□□ 1.35
HIPK3Q9H422 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HIPK3Q9H422 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HIPK3Q9H422 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
HIPK3Q9H422 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC23.51■■□□□ 1.35
HIPK3Q9H422 IRX5-204ENST00000560154 879 ntTSL 5 BASIC23.51■■□□□ 1.35
HIPK3Q9H422 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
HIPK3Q9H422 AC083880.1-201ENST00000608266 535 ntBASIC23.51■■□□□ 1.35
HIPK3Q9H422 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
HIPK3Q9H422 AP006294.2-201ENST00000641667 209 ntBASIC23.51■■□□□ 1.35
HIPK3Q9H422 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
HIPK3Q9H422 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HIPK3Q9H422 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
HIPK3Q9H422 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
HIPK3Q9H422 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
HIPK3Q9H422 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
HIPK3Q9H422 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
HIPK3Q9H422 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC23.5■■□□□ 1.35
HIPK3Q9H422 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC23.5■■□□□ 1.35
HIPK3Q9H422 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.5■■□□□ 1.35
HIPK3Q9H422 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC23.5■■□□□ 1.35
HIPK3Q9H422 OR7E47P-201ENST00000546390 1422 ntBASIC23.5■■□□□ 1.35
HIPK3Q9H422 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC23.49■■□□□ 1.35
HIPK3Q9H422 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.49■■□□□ 1.35
HIPK3Q9H422 ESRRAP1-201ENST00000400596 1257 ntBASIC23.49■■□□□ 1.35
HIPK3Q9H422 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.49■■□□□ 1.35
HIPK3Q9H422 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC23.49■■□□□ 1.35
HIPK3Q9H422 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC23.49■■□□□ 1.35
HIPK3Q9H422 AL034346.1-201ENST00000568244 1277 ntBASIC23.49■■□□□ 1.35
HIPK3Q9H422 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
HIPK3Q9H422 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms