Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.48■■□□□ 1.03
VPS11Q9H270 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
VPS11Q9H270 pRNA.6-201ENST00000610482 90 ntBASIC21.48■■□□□ 1.03
VPS11Q9H270 pRNA.5-201ENST00000612139 90 ntBASIC21.48■■□□□ 1.03
VPS11Q9H270 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VPS11Q9H270 pRNA.11-201ENST00000618423 90 ntBASIC21.48■■□□□ 1.03
VPS11Q9H270 pRNA.13-201ENST00000619112 90 ntBASIC21.48■■□□□ 1.03
VPS11Q9H270 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.48■■□□□ 1.03
VPS11Q9H270 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS11Q9H270 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
VPS11Q9H270 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
VPS11Q9H270 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VPS11Q9H270 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VPS11Q9H270 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.48■■□□□ 1.03
VPS11Q9H270 AF106564.1-201ENST00000607058 2553 ntBASIC21.47■■□□□ 1.03
VPS11Q9H270 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS11Q9H270 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS11Q9H270 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.47■■□□□ 1.03
VPS11Q9H270 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS11Q9H270 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS11Q9H270 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS11Q9H270 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS11Q9H270 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS11Q9H270 KRT16P3-201ENST00000439127 1283 ntBASIC21.47■■□□□ 1.03
VPS11Q9H270 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.47■■□□□ 1.03
VPS11Q9H270 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.47■■□□□ 1.03
VPS11Q9H270 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS11Q9H270 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VPS11Q9H270 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VPS11Q9H270 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.47■■□□□ 1.03
VPS11Q9H270 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS11Q9H270 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS11Q9H270 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS11Q9H270 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS11Q9H270 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.46■■□□□ 1.03
VPS11Q9H270 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS11Q9H270 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.46■■□□□ 1.03
VPS11Q9H270 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.46■■□□□ 1.03
VPS11Q9H270 AL031602.1-201ENST00000633169 911 ntBASIC21.46■■□□□ 1.03
VPS11Q9H270 LINC01521-201ENST00000504184 1943 ntBASIC21.46■■□□□ 1.03
VPS11Q9H270 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS11Q9H270 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS11Q9H270 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS11Q9H270 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VPS11Q9H270 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.46■■□□□ 1.03
VPS11Q9H270 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VPS11Q9H270 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
VPS11Q9H270 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VPS11Q9H270 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS11Q9H270 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
VPS11Q9H270 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.45■■□□□ 1.02
VPS11Q9H270 AC079089.2-201ENST00000531211 1277 ntBASIC21.45■■□□□ 1.02
VPS11Q9H270 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.45■■□□□ 1.02
VPS11Q9H270 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS11Q9H270 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS11Q9H270 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS11Q9H270 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS11Q9H270 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
VPS11Q9H270 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC21.44■■□□□ 1.02
VPS11Q9H270 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VPS11Q9H270 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.44■■□□□ 1.02
VPS11Q9H270 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.44■■□□□ 1.02
VPS11Q9H270 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS11Q9H270 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS11Q9H270 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS11Q9H270 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.44■■□□□ 1.02
VPS11Q9H270 AC099791.2-201ENST00000605725 427 ntBASIC21.44■■□□□ 1.02
VPS11Q9H270 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
VPS11Q9H270 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.44■■□□□ 1.02
VPS11Q9H270 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.44■■□□□ 1.02
VPS11Q9H270 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
VPS11Q9H270 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS11Q9H270 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
VPS11Q9H270 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
VPS11Q9H270 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
VPS11Q9H270 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VPS11Q9H270 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VPS11Q9H270 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
VPS11Q9H270 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VPS11Q9H270 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.43■■□□□ 1.02
VPS11Q9H270 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VPS11Q9H270 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
VPS11Q9H270 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VPS11Q9H270 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
VPS11Q9H270 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VPS11Q9H270 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
VPS11Q9H270 AL157384.1-201ENST00000445995 2473 ntBASIC21.43■■□□□ 1.02
VPS11Q9H270 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS11Q9H270 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
VPS11Q9H270 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS11Q9H270 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
VPS11Q9H270 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.42■■□□□ 1.02
VPS11Q9H270 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.42■■□□□ 1.02
VPS11Q9H270 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
VPS11Q9H270 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.42■■□□□ 1.02
VPS11Q9H270 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.42■■□□□ 1.02
VPS11Q9H270 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.42■■□□□ 1.02
VPS11Q9H270 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
VPS11Q9H270 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
VPS11Q9H270 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms