Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB4Q8WW32 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB4Q8WW32 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.53■■□□□ 1.04
HMGB4Q8WW32 AC069152.1-201ENST00000438030 544 ntBASIC21.53■■□□□ 1.04
HMGB4Q8WW32 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB4Q8WW32 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB4Q8WW32 AL034346.1-201ENST00000568244 1277 ntBASIC21.53■■□□□ 1.04
HMGB4Q8WW32 LINC00526-201ENST00000581067 1875 ntBASIC21.53■■□□□ 1.04
HMGB4Q8WW32 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB4Q8WW32 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB4Q8WW32 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB4Q8WW32 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGB4Q8WW32 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.53■■□□□ 1.04
HMGB4Q8WW32 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 AC133552.2-202ENST00000575694 574 ntBASIC21.52■■□□□ 1.04
HMGB4Q8WW32 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGB4Q8WW32 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
HMGB4Q8WW32 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.51■■□□□ 1.03
HMGB4Q8WW32 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
HMGB4Q8WW32 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.51■■□□□ 1.03
HMGB4Q8WW32 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB4Q8WW32 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.51■■□□□ 1.03
HMGB4Q8WW32 MIR4651-201ENST00000582622 73 ntBASIC21.51■■□□□ 1.03
HMGB4Q8WW32 AC013268.1-206ENST00000638368 961 ntBASIC21.51■■□□□ 1.03
HMGB4Q8WW32 AC112229.1-201ENST00000639295 961 ntBASIC21.51■■□□□ 1.03
HMGB4Q8WW32 AC133041.1-202ENST00000642053 222 ntBASIC21.51■■□□□ 1.03
HMGB4Q8WW32 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB4Q8WW32 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
HMGB4Q8WW32 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB4Q8WW32 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB4Q8WW32 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
HMGB4Q8WW32 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB4Q8WW32 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB4Q8WW32 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC21.5■■□□□ 1.03
HMGB4Q8WW32 AC098934.4-201ENST00000564127 592 ntBASIC21.5■■□□□ 1.03
HMGB4Q8WW32 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HMGB4Q8WW32 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.5■■□□□ 1.03
HMGB4Q8WW32 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.49■■□□□ 1.03
HMGB4Q8WW32 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.49■■□□□ 1.03
HMGB4Q8WW32 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB4Q8WW32 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.49■■□□□ 1.03
HMGB4Q8WW32 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.49■■□□□ 1.03
HMGB4Q8WW32 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.49■■□□□ 1.03
HMGB4Q8WW32 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.49■■□□□ 1.03
HMGB4Q8WW32 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.49■■□□□ 1.03
HMGB4Q8WW32 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
HMGB4Q8WW32 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
HMGB4Q8WW32 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB4Q8WW32 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.48■■□□□ 1.03
HMGB4Q8WW32 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB4Q8WW32 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB4Q8WW32 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB4Q8WW32 UQCRFS1P1-201ENST00000435169 820 ntBASIC21.48■■□□□ 1.03
HMGB4Q8WW32 TERF1P5-201ENST00000477545 1207 ntBASIC21.48■■□□□ 1.03
HMGB4Q8WW32 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.48■■□□□ 1.03
HMGB4Q8WW32 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGB4Q8WW32 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB4Q8WW32 AP006587.3-201ENST00000525742 1516 ntBASIC21.48■■□□□ 1.03
HMGB4Q8WW32 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB4Q8WW32 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB4Q8WW32 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HMGB4Q8WW32 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.48■■□□□ 1.03
HMGB4Q8WW32 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB4Q8WW32 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB4Q8WW32 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.47■■□□□ 1.03
HMGB4Q8WW32 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
HMGB4Q8WW32 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
HMGB4Q8WW32 FAM201B-201ENST00000458407 597 ntBASIC21.47■■□□□ 1.03
HMGB4Q8WW32 EEF1DP3-203ENST00000566025 782 ntBASIC21.47■■□□□ 1.03
HMGB4Q8WW32 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.47■■□□□ 1.03
HMGB4Q8WW32 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
HMGB4Q8WW32 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
HMGB4Q8WW32 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
HMGB4Q8WW32 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB4Q8WW32 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB4Q8WW32 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB4Q8WW32 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB4Q8WW32 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
HMGB4Q8WW32 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms