Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.21■□□□□ 0.99
NUDCD3Q8IVD9 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
NUDCD3Q8IVD9 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.21■□□□□ 0.99
NUDCD3Q8IVD9 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.21■□□□□ 0.99
NUDCD3Q8IVD9 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
NUDCD3Q8IVD9 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.21■□□□□ 0.99
NUDCD3Q8IVD9 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
NUDCD3Q8IVD9 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
NUDCD3Q8IVD9 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
NUDCD3Q8IVD9 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
NUDCD3Q8IVD9 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 LINC01521-201ENST00000504184 1943 ntBASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 AL031602.1-201ENST00000633169 911 ntBASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
NUDCD3Q8IVD9 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUDCD3Q8IVD9 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
NUDCD3Q8IVD9 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.19■□□□□ 0.98
NUDCD3Q8IVD9 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NUDCD3Q8IVD9 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.19■□□□□ 0.98
NUDCD3Q8IVD9 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
NUDCD3Q8IVD9 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
NUDCD3Q8IVD9 PRTG-204ENST00000561292 833 ntTSL 3 BASIC21.19■□□□□ 0.98
NUDCD3Q8IVD9 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
NUDCD3Q8IVD9 OR7E47P-201ENST00000546390 1422 ntBASIC21.19■□□□□ 0.98
NUDCD3Q8IVD9 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
NUDCD3Q8IVD9 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
NUDCD3Q8IVD9 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.19■□□□□ 0.98
NUDCD3Q8IVD9 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.18■□□□□ 0.98
NUDCD3Q8IVD9 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.18■□□□□ 0.98
NUDCD3Q8IVD9 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUDCD3Q8IVD9 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.18■□□□□ 0.98
NUDCD3Q8IVD9 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUDCD3Q8IVD9 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.18■□□□□ 0.98
NUDCD3Q8IVD9 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUDCD3Q8IVD9 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
NUDCD3Q8IVD9 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.18■□□□□ 0.98
NUDCD3Q8IVD9 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
NUDCD3Q8IVD9 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUDCD3Q8IVD9 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUDCD3Q8IVD9 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC21.18■□□□□ 0.98
NUDCD3Q8IVD9 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
NUDCD3Q8IVD9 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUDCD3Q8IVD9 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NUDCD3Q8IVD9 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.17■□□□□ 0.98
NUDCD3Q8IVD9 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.17■□□□□ 0.98
NUDCD3Q8IVD9 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUDCD3Q8IVD9 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.17■□□□□ 0.98
NUDCD3Q8IVD9 KRT125P-201ENST00000546827 989 ntBASIC21.17■□□□□ 0.98
NUDCD3Q8IVD9 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.17■□□□□ 0.98
NUDCD3Q8IVD9 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NUDCD3Q8IVD9 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
NUDCD3Q8IVD9 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.17■□□□□ 0.98
NUDCD3Q8IVD9 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.17■□□□□ 0.98
NUDCD3Q8IVD9 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NUDCD3Q8IVD9 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NUDCD3Q8IVD9 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NUDCD3Q8IVD9 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.15■□□□□ 0.98
NUDCD3Q8IVD9 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
NUDCD3Q8IVD9 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NUDCD3Q8IVD9 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NUDCD3Q8IVD9 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
NUDCD3Q8IVD9 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NUDCD3Q8IVD9 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NUDCD3Q8IVD9 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.15■□□□□ 0.98
NUDCD3Q8IVD9 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
NUDCD3Q8IVD9 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
NUDCD3Q8IVD9 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NUDCD3Q8IVD9 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms