Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VRK3Q8IV63 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.99■□□□□ 0.95
VRK3Q8IV63 TPRG1LP1-201ENST00000598702 760 ntBASIC20.99■□□□□ 0.95
VRK3Q8IV63 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VRK3Q8IV63 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.99■□□□□ 0.95
VRK3Q8IV63 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.99■□□□□ 0.95
VRK3Q8IV63 FBXW4P1-201ENST00000426721 2239 ntBASIC20.98■□□□□ 0.95
VRK3Q8IV63 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.98■□□□□ 0.95
VRK3Q8IV63 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VRK3Q8IV63 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VRK3Q8IV63 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
VRK3Q8IV63 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VRK3Q8IV63 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
VRK3Q8IV63 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VRK3Q8IV63 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.98■□□□□ 0.95
VRK3Q8IV63 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VRK3Q8IV63 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VRK3Q8IV63 AP006587.3-201ENST00000525742 1516 ntBASIC20.98■□□□□ 0.95
VRK3Q8IV63 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
VRK3Q8IV63 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VRK3Q8IV63 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.97■□□□□ 0.95
VRK3Q8IV63 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.97■□□□□ 0.95
VRK3Q8IV63 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VRK3Q8IV63 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VRK3Q8IV63 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VRK3Q8IV63 AC005224.4-201ENST00000583262 1652 ntBASIC20.97■□□□□ 0.95
VRK3Q8IV63 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VRK3Q8IV63 AC027612.3-201ENST00000413684 1047 ntBASIC20.97■□□□□ 0.95
VRK3Q8IV63 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.97■□□□□ 0.95
VRK3Q8IV63 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VRK3Q8IV63 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.97■□□□□ 0.95
VRK3Q8IV63 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VRK3Q8IV63 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VRK3Q8IV63 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
VRK3Q8IV63 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VRK3Q8IV63 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VRK3Q8IV63 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.96■□□□□ 0.95
VRK3Q8IV63 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VRK3Q8IV63 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.96■□□□□ 0.95
VRK3Q8IV63 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.96■□□□□ 0.95
VRK3Q8IV63 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VRK3Q8IV63 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.96■□□□□ 0.95
VRK3Q8IV63 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VRK3Q8IV63 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VRK3Q8IV63 AC009237.3-201ENST00000393279 1427 ntBASIC20.95■□□□□ 0.95
VRK3Q8IV63 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
VRK3Q8IV63 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
VRK3Q8IV63 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VRK3Q8IV63 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VRK3Q8IV63 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VRK3Q8IV63 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
VRK3Q8IV63 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.95■□□□□ 0.94
VRK3Q8IV63 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
VRK3Q8IV63 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
VRK3Q8IV63 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.95■□□□□ 0.94
VRK3Q8IV63 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VRK3Q8IV63 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
VRK3Q8IV63 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VRK3Q8IV63 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VRK3Q8IV63 AC055733.4-201ENST00000638462 1354 ntBASIC20.95■□□□□ 0.94
VRK3Q8IV63 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.95■□□□□ 0.94
VRK3Q8IV63 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
VRK3Q8IV63 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VRK3Q8IV63 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VRK3Q8IV63 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VRK3Q8IV63 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.94■□□□□ 0.94
VRK3Q8IV63 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VRK3Q8IV63 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VRK3Q8IV63 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.94■□□□□ 0.94
VRK3Q8IV63 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
VRK3Q8IV63 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.94■□□□□ 0.94
VRK3Q8IV63 AC003102.1-202ENST00000563394 1796 ntBASIC20.94■□□□□ 0.94
VRK3Q8IV63 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VRK3Q8IV63 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
VRK3Q8IV63 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VRK3Q8IV63 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VRK3Q8IV63 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.94■□□□□ 0.94
VRK3Q8IV63 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VRK3Q8IV63 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VRK3Q8IV63 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
VRK3Q8IV63 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
VRK3Q8IV63 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.93■□□□□ 0.94
VRK3Q8IV63 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.93■□□□□ 0.94
VRK3Q8IV63 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.93■□□□□ 0.94
VRK3Q8IV63 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.93■□□□□ 0.94
VRK3Q8IV63 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.93■□□□□ 0.94
VRK3Q8IV63 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
VRK3Q8IV63 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.93■□□□□ 0.94
VRK3Q8IV63 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
VRK3Q8IV63 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
VRK3Q8IV63 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
VRK3Q8IV63 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
VRK3Q8IV63 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VRK3Q8IV63 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VRK3Q8IV63 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VRK3Q8IV63 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VRK3Q8IV63 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
VRK3Q8IV63 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.92■□□□□ 0.94
VRK3Q8IV63 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.92■□□□□ 0.94
VRK3Q8IV63 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms