Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 AC006970.2-201ENST00000450065 779 ntBASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC24.64■■□□□ 1.54
SH3RF1Q7Z6J0 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
SH3RF1Q7Z6J0 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.53
SH3RF1Q7Z6J0 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 CLDN5-201ENST00000403084 2357 ntBASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 BID-214ENST00000617586 542 ntTSL 5 BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
SH3RF1Q7Z6J0 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SH3RF1Q7Z6J0 AC004854.2-201ENST00000608450 1441 ntBASIC24.62■■□□□ 1.53
SH3RF1Q7Z6J0 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC24.62■■□□□ 1.53
SH3RF1Q7Z6J0 COX20-201ENST00000366528 568 ntTSL 2 BASIC24.62■■□□□ 1.53
SH3RF1Q7Z6J0 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SH3RF1Q7Z6J0 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC24.62■■□□□ 1.53
SH3RF1Q7Z6J0 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC24.62■■□□□ 1.53
SH3RF1Q7Z6J0 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SH3RF1Q7Z6J0 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SH3RF1Q7Z6J0 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SH3RF1Q7Z6J0 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 AC137767.1-201ENST00000602918 1920 ntBASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 TPRG1LP1-201ENST00000598702 760 ntBASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 AC066615.1-201ENST00000640911 628 ntBASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SH3RF1Q7Z6J0 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SH3RF1Q7Z6J0 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC24.6■■□□□ 1.53
SH3RF1Q7Z6J0 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SH3RF1Q7Z6J0 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SH3RF1Q7Z6J0 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC24.6■■□□□ 1.53
SH3RF1Q7Z6J0 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SH3RF1Q7Z6J0 NCF1B-203ENST00000435988 1254 ntBASIC24.6■■□□□ 1.53
SH3RF1Q7Z6J0 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SH3RF1Q7Z6J0 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC24.6■■□□□ 1.53
SH3RF1Q7Z6J0 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC24.6■■□□□ 1.53
SH3RF1Q7Z6J0 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC24.6■■□□□ 1.53
SH3RF1Q7Z6J0 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
SH3RF1Q7Z6J0 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SH3RF1Q7Z6J0 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
SH3RF1Q7Z6J0 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SH3RF1Q7Z6J0 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
SH3RF1Q7Z6J0 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
SH3RF1Q7Z6J0 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
SH3RF1Q7Z6J0 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SH3RF1Q7Z6J0 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SH3RF1Q7Z6J0 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SH3RF1Q7Z6J0 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC24.59■■□□□ 1.53
SH3RF1Q7Z6J0 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC24.59■■□□□ 1.53
SH3RF1Q7Z6J0 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC24.59■■□□□ 1.53
SH3RF1Q7Z6J0 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC24.59■■□□□ 1.53
SH3RF1Q7Z6J0 C11orf96-202ENST00000528572 1834 ntBASIC24.58■■□□□ 1.53
SH3RF1Q7Z6J0 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
SH3RF1Q7Z6J0 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
SH3RF1Q7Z6J0 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
SH3RF1Q7Z6J0 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC24.58■■□□□ 1.53
SH3RF1Q7Z6J0 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC24.58■■□□□ 1.53
SH3RF1Q7Z6J0 WT1-AS_3.1-201ENST00000613262 234 ntBASIC24.58■■□□□ 1.53
SH3RF1Q7Z6J0 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC24.58■■□□□ 1.53
SH3RF1Q7Z6J0 WWOX-218ENST00000627394 894 ntTSL 5 BASIC24.58■■□□□ 1.53
SH3RF1Q7Z6J0 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.53
SH3RF1Q7Z6J0 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
SH3RF1Q7Z6J0 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC24.58■■□□□ 1.52
SH3RF1Q7Z6J0 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.52
SH3RF1Q7Z6J0 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SH3RF1Q7Z6J0 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC24.57■■□□□ 1.52
SH3RF1Q7Z6J0 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
SH3RF1Q7Z6J0 WWC2-AS2-201ENST00000578387 2183 ntBASIC24.57■■□□□ 1.52
SH3RF1Q7Z6J0 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
SH3RF1Q7Z6J0 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SH3RF1Q7Z6J0 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms