Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
NUP54Q7Z3B4 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP54Q7Z3B4 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP54Q7Z3B4 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP54Q7Z3B4 RARRES2P6-201ENST00000567333 442 ntBASIC19.77■□□□□ 0.76
NUP54Q7Z3B4 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
NUP54Q7Z3B4 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
NUP54Q7Z3B4 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.77■□□□□ 0.76
NUP54Q7Z3B4 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
NUP54Q7Z3B4 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.77■□□□□ 0.76
NUP54Q7Z3B4 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
NUP54Q7Z3B4 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.77■□□□□ 0.75
NUP54Q7Z3B4 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 TPRG1LP1-201ENST00000598702 760 ntBASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
NUP54Q7Z3B4 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 AC026271.2-201ENST00000428091 497 ntBASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
NUP54Q7Z3B4 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 C11orf96-202ENST00000528572 1834 ntBASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.74■□□□□ 0.75
NUP54Q7Z3B4 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 AC005224.4-201ENST00000583262 1652 ntBASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
NUP54Q7Z3B4 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms