Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 AC105233.4-201ENST00000642045 216 ntBASIC20.53■□□□□ 0.88
TRIM40Q6P9F5 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM40Q6P9F5 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
TRIM40Q6P9F5 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM40Q6P9F5 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM40Q6P9F5 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM40Q6P9F5 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM40Q6P9F5 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TRIM40Q6P9F5 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.53■□□□□ 0.88
TRIM40Q6P9F5 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.52■□□□□ 0.88
TRIM40Q6P9F5 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM40Q6P9F5 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.52■□□□□ 0.88
TRIM40Q6P9F5 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
TRIM40Q6P9F5 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM40Q6P9F5 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM40Q6P9F5 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
TRIM40Q6P9F5 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM40Q6P9F5 SMUG1P1-201ENST00000590640 811 ntBASIC20.52■□□□□ 0.88
TRIM40Q6P9F5 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.52■□□□□ 0.88
TRIM40Q6P9F5 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM40Q6P9F5 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
TRIM40Q6P9F5 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.52■□□□□ 0.87
TRIM40Q6P9F5 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
TRIM40Q6P9F5 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.52■□□□□ 0.87
TRIM40Q6P9F5 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
TRIM40Q6P9F5 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
TRIM40Q6P9F5 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM40Q6P9F5 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 FBXW4P1-201ENST00000426721 2239 ntBASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 AP004607.7-201ENST00000527152 1677 ntBASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.5■□□□□ 0.87
TRIM40Q6P9F5 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
TRIM40Q6P9F5 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM40Q6P9F5 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM40Q6P9F5 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM40Q6P9F5 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM40Q6P9F5 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.49■□□□□ 0.87
TRIM40Q6P9F5 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
TRIM40Q6P9F5 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM40Q6P9F5 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM40Q6P9F5 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.49■□□□□ 0.87
TRIM40Q6P9F5 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM40Q6P9F5 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM40Q6P9F5 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.47■□□□□ 0.87
TRIM40Q6P9F5 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.47■□□□□ 0.87
TRIM40Q6P9F5 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM40Q6P9F5 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM40Q6P9F5 IRS3P-201ENST00000223076 1006 ntBASIC20.47■□□□□ 0.87
TRIM40Q6P9F5 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.47■□□□□ 0.87
TRIM40Q6P9F5 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM40Q6P9F5 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM40Q6P9F5 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.47■□□□□ 0.87
TRIM40Q6P9F5 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM40Q6P9F5 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms