Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 KRT18P5-201ENST00000436075 1291 ntBASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 DUX4L19-201ENST00000557448 1267 ntBASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 DUX4L4-201ENST00000566884 1269 ntBASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 AC009086.3-201ENST00000623486 1008 ntBASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
PDLIM3Q53GG5 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 AC005703.6-201ENST00000623265 1329 ntBASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
PDLIM3Q53GG5 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 SP2-202ENST00000613139 908 ntTSL 5 BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
PDLIM3Q53GG5 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 AC027682.1-201ENST00000562846 899 ntBASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 SF1-220ENST00000626028 704 ntTSL 2 BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 LINC01960-201ENST00000563759 1884 ntBASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 FBXW4P1-201ENST00000426721 2239 ntBASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
PDLIM3Q53GG5 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC17.59■□□□□ 0.41
PDLIM3Q53GG5 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms