Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
PTCHD3Q3KNS1 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTCHD3Q3KNS1 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTCHD3Q3KNS1 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PTCHD3Q3KNS1 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTCHD3Q3KNS1 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTCHD3Q3KNS1 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC20.92■□□□□ 0.94
PTCHD3Q3KNS1 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTCHD3Q3KNS1 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTCHD3Q3KNS1 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTCHD3Q3KNS1 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
PTCHD3Q3KNS1 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.91■□□□□ 0.94
PTCHD3Q3KNS1 MIR572-201ENST00000384983 95 ntBASIC20.91■□□□□ 0.94
PTCHD3Q3KNS1 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTCHD3Q3KNS1 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.91■□□□□ 0.94
PTCHD3Q3KNS1 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.91■□□□□ 0.94
PTCHD3Q3KNS1 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.91■□□□□ 0.94
PTCHD3Q3KNS1 AL162430.1-201ENST00000480705 870 ntBASIC20.91■□□□□ 0.94
PTCHD3Q3KNS1 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
PTCHD3Q3KNS1 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PTCHD3Q3KNS1 AC104564.3-201ENST00000582367 638 ntBASIC20.91■□□□□ 0.94
PTCHD3Q3KNS1 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PTCHD3Q3KNS1 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.91■□□□□ 0.94
PTCHD3Q3KNS1 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.9■□□□□ 0.94
PTCHD3Q3KNS1 AC010542.4-201ENST00000563151 1910 ntBASIC20.9■□□□□ 0.94
PTCHD3Q3KNS1 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.9■□□□□ 0.94
PTCHD3Q3KNS1 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTCHD3Q3KNS1 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PTCHD3Q3KNS1 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTCHD3Q3KNS1 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTCHD3Q3KNS1 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PTCHD3Q3KNS1 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC20.9■□□□□ 0.94
PTCHD3Q3KNS1 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTCHD3Q3KNS1 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PTCHD3Q3KNS1 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PTCHD3Q3KNS1 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
PTCHD3Q3KNS1 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
PTCHD3Q3KNS1 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.89■□□□□ 0.94
PTCHD3Q3KNS1 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
PTCHD3Q3KNS1 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.89■□□□□ 0.93
PTCHD3Q3KNS1 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTCHD3Q3KNS1 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTCHD3Q3KNS1 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.89■□□□□ 0.93
PTCHD3Q3KNS1 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PTCHD3Q3KNS1 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.89■□□□□ 0.93
PTCHD3Q3KNS1 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTCHD3Q3KNS1 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTCHD3Q3KNS1 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.89■□□□□ 0.93
PTCHD3Q3KNS1 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.89■□□□□ 0.93
PTCHD3Q3KNS1 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PTCHD3Q3KNS1 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 AC012414.1-201ENST00000556676 535 ntBASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 AL358852.1-201ENST00000623174 1268 ntBASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PTCHD3Q3KNS1 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 AC026471.6-201ENST00000622954 1905 ntBASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 YBX1P1-201ENST00000445822 960 ntBASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.87■□□□□ 0.93
PTCHD3Q3KNS1 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTCHD3Q3KNS1 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTCHD3Q3KNS1 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
PTCHD3Q3KNS1 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PTCHD3Q3KNS1 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.86■□□□□ 0.93
PTCHD3Q3KNS1 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.86■□□□□ 0.93
PTCHD3Q3KNS1 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PTCHD3Q3KNS1 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PTCHD3Q3KNS1 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms