Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
LSM3P62310 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
LSM3P62310 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LSM3P62310 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LSM3P62310 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC19.26■□□□□ 0.67
LSM3P62310 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LSM3P62310 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.26■□□□□ 0.67
LSM3P62310 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
LSM3P62310 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
LSM3P62310 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.26■□□□□ 0.67
LSM3P62310 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
LSM3P62310 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.26■□□□□ 0.67
LSM3P62310 AC087393.1-201ENST00000582896 145 ntBASIC19.26■□□□□ 0.67
LSM3P62310 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
LSM3P62310 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
LSM3P62310 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.26■□□□□ 0.67
LSM3P62310 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
LSM3P62310 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
LSM3P62310 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
LSM3P62310 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
LSM3P62310 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LSM3P62310 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LSM3P62310 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM3P62310 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LSM3P62310 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
LSM3P62310 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM3P62310 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM3P62310 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LSM3P62310 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
LSM3P62310 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.25■□□□□ 0.67
LSM3P62310 AC011551.1-201ENST00000614101 683 ntBASIC19.25■□□□□ 0.67
LSM3P62310 AC133552.2-201ENST00000619106 1032 ntBASIC19.25■□□□□ 0.67
LSM3P62310 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LSM3P62310 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LSM3P62310 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
LSM3P62310 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
LSM3P62310 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM3P62310 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM3P62310 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
LSM3P62310 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.24■□□□□ 0.67
LSM3P62310 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM3P62310 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
LSM3P62310 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM3P62310 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM3P62310 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.24■□□□□ 0.67
LSM3P62310 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.24■□□□□ 0.67
LSM3P62310 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM3P62310 CEP120-209ENST00000515110 606 ntTSL 3 BASIC19.24■□□□□ 0.67
LSM3P62310 AC018755.3-202ENST00000596210 929 ntBASIC19.24■□□□□ 0.67
LSM3P62310 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
LSM3P62310 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.24■□□□□ 0.67
LSM3P62310 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
LSM3P62310 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM3P62310 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
LSM3P62310 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
LSM3P62310 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.23■□□□□ 0.67
LSM3P62310 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM3P62310 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.23■□□□□ 0.67
LSM3P62310 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM3P62310 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.23■□□□□ 0.67
LSM3P62310 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.23■□□□□ 0.67
LSM3P62310 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LSM3P62310 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
LSM3P62310 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM3P62310 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
LSM3P62310 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.22■□□□□ 0.67
LSM3P62310 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM3P62310 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LSM3P62310 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LSM3P62310 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LSM3P62310 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LSM3P62310 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
LSM3P62310 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC19.22■□□□□ 0.67
LSM3P62310 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.22■□□□□ 0.67
LSM3P62310 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
LSM3P62310 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
LSM3P62310 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
LSM3P62310 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM3P62310 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM3P62310 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
LSM3P62310 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
LSM3P62310 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.21■□□□□ 0.67
LSM3P62310 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
LSM3P62310 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LSM3P62310 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
LSM3P62310 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
LSM3P62310 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM3P62310 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM3P62310 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM3P62310 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM3P62310 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
LSM3P62310 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
LSM3P62310 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
LSM3P62310 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC19.2■□□□□ 0.66
LSM3P62310 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM3P62310 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.2■□□□□ 0.66
LSM3P62310 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
LSM3P62310 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
LSM3P62310 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
LSM3P62310 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms