Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SOX2P48431 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX2P48431 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SOX2P48431 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SOX2P48431 AC073130.3-201ENST00000624389 2278 ntBASIC18.78■□□□□ 0.6
SOX2P48431 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SOX2P48431 Z92544.1-202ENST00000571933 1220 ntBASIC18.78■□□□□ 0.6
SOX2P48431 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX2P48431 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX2P48431 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX2P48431 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SOX2P48431 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.78■□□□□ 0.6
SOX2P48431 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
SOX2P48431 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.78■□□□□ 0.6
SOX2P48431 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.78■□□□□ 0.6
SOX2P48431 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SOX2P48431 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.6
SOX2P48431 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX2P48431 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX2P48431 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX2P48431 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX2P48431 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.77■□□□□ 0.6
SOX2P48431 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.77■□□□□ 0.6
SOX2P48431 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SOX2P48431 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SOX2P48431 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SOX2P48431 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.77■□□□□ 0.6
SOX2P48431 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX2P48431 AC239859.2-201ENST00000444165 318 ntBASIC18.77■□□□□ 0.6
SOX2P48431 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC18.77■□□□□ 0.6
SOX2P48431 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.77■□□□□ 0.6
SOX2P48431 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC18.77■□□□□ 0.6
SOX2P48431 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.77■□□□□ 0.6
SOX2P48431 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX2P48431 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SOX2P48431 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SOX2P48431 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SOX2P48431 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SOX2P48431 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.77■□□□□ 0.59
SOX2P48431 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SOX2P48431 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SOX2P48431 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SOX2P48431 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.76■□□□□ 0.59
SOX2P48431 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SOX2P48431 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
SOX2P48431 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SOX2P48431 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
SOX2P48431 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.76■□□□□ 0.59
SOX2P48431 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SOX2P48431 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX2P48431 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX2P48431 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.75■□□□□ 0.59
SOX2P48431 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX2P48431 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX2P48431 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX2P48431 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX2P48431 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SOX2P48431 AC079089.2-201ENST00000531211 1277 ntBASIC18.75■□□□□ 0.59
SOX2P48431 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SOX2P48431 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX2P48431 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX2P48431 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
SOX2P48431 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX2P48431 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX2P48431 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX2P48431 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SOX2P48431 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX2P48431 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SOX2P48431 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
SOX2P48431 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
SOX2P48431 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.74■□□□□ 0.59
SOX2P48431 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SOX2P48431 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SOX2P48431 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX2P48431 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX2P48431 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX2P48431 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX2P48431 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX2P48431 AL117332.1-201ENST00000622628 974 ntBASIC18.74■□□□□ 0.59
SOX2P48431 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.74■□□□□ 0.59
SOX2P48431 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.74■□□□□ 0.59
SOX2P48431 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX2P48431 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
SOX2P48431 AL157384.1-201ENST00000445995 2473 ntBASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms