Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFX3P48380 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
RFX3P48380 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFX3P48380 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFX3P48380 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFX3P48380 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFX3P48380 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RFX3P48380 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RFX3P48380 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
RFX3P48380 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
RFX3P48380 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFX3P48380 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFX3P48380 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.04■□□□□ 0.8
RFX3P48380 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RFX3P48380 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
RFX3P48380 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RFX3P48380 OR7E47P-201ENST00000546390 1422 ntBASIC20.03■□□□□ 0.8
RFX3P48380 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFX3P48380 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFX3P48380 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFX3P48380 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFX3P48380 AC142381.2-201ENST00000566120 298 ntBASIC20.03■□□□□ 0.8
RFX3P48380 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.03■□□□□ 0.8
RFX3P48380 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
RFX3P48380 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFX3P48380 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RFX3P48380 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
RFX3P48380 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
RFX3P48380 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
RFX3P48380 OXCT2P1-201ENST00000447263 1535 ntBASIC20.02■□□□□ 0.8
RFX3P48380 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.02■□□□□ 0.8
RFX3P48380 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
RFX3P48380 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.02■□□□□ 0.8
RFX3P48380 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RFX3P48380 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.02■□□□□ 0.8
RFX3P48380 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.02■□□□□ 0.8
RFX3P48380 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.02■□□□□ 0.8
RFX3P48380 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.02■□□□□ 0.8
RFX3P48380 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
RFX3P48380 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
RFX3P48380 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.02■□□□□ 0.79
RFX3P48380 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
RFX3P48380 TSPY26P-201ENST00000476365 1326 ntBASIC20.02■□□□□ 0.79
RFX3P48380 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX3P48380 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.01■□□□□ 0.79
RFX3P48380 MIR939-201ENST00000401314 82 ntBASIC20.01■□□□□ 0.79
RFX3P48380 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX3P48380 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.01■□□□□ 0.79
RFX3P48380 C11orf96-202ENST00000528572 1834 ntBASIC20.01■□□□□ 0.79
RFX3P48380 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX3P48380 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
RFX3P48380 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
RFX3P48380 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20■□□□□ 0.79
RFX3P48380 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
RFX3P48380 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
RFX3P48380 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
RFX3P48380 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20■□□□□ 0.79
RFX3P48380 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RFX3P48380 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20■□□□□ 0.79
RFX3P48380 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20■□□□□ 0.79
RFX3P48380 IGHV3-19-201ENST00000521488 291 ntBASIC20■□□□□ 0.79
RFX3P48380 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20■□□□□ 0.79
RFX3P48380 AL031432.3-201ENST00000607698 485 ntBASIC20■□□□□ 0.79
RFX3P48380 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
RFX3P48380 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
RFX3P48380 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20■□□□□ 0.79
RFX3P48380 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFX3P48380 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFX3P48380 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
RFX3P48380 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RFX3P48380 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFX3P48380 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFX3P48380 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFX3P48380 RASA4CP-201ENST00000424092 1398 ntBASIC19.99■□□□□ 0.79
RFX3P48380 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFX3P48380 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
RFX3P48380 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFX3P48380 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.99■□□□□ 0.79
RFX3P48380 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
RFX3P48380 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC19.99■□□□□ 0.79
RFX3P48380 AC091305.1-201ENST00000479476 895 ntBASIC19.99■□□□□ 0.79
RFX3P48380 AC005837.3-201ENST00000612163 286 ntBASIC19.99■□□□□ 0.79
RFX3P48380 AIRN-201ENST00000601203 4374 ntBASIC19.99■□□□□ 0.79
RFX3P48380 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
RFX3P48380 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.99■□□□□ 0.79
RFX3P48380 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
RFX3P48380 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RFX3P48380 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RFX3P48380 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.98■□□□□ 0.79
RFX3P48380 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
RFX3P48380 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RFX3P48380 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.98■□□□□ 0.79
RFX3P48380 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.98■□□□□ 0.79
RFX3P48380 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RFX3P48380 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
RFX3P48380 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
RFX3P48380 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.98■□□□□ 0.79
RFX3P48380 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.98■□□□□ 0.79
RFX3P48380 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
RFX3P48380 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms